Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_D22
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.3
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 31 1.3
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 30 1.8
07_03_0846 - 21983581-21986055 29 3.1
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.1
02_01_0444 + 3212646-3212686,3213093-3213225,3213467-3213570,321... 29 3.1
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 29 4.1
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.4
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.5
01_06_0806 - 32123513-32123905 28 9.5
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 356 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 222
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 88 PSTTPRQERKSPTDYSEPRHRTELYPDLRSRDARVKKKTDSID 216
PS TP ER +D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 715 YKEFLARG-ARKVTTGITGLWQPSVHSDVAFD 623
YK F A G RKV GIT + PS+ D+AFD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 214 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 363
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 443 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 345
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>02_01_0444 +
3212646-3212686,3213093-3213225,3213467-3213570,
3214360-3214504,3214592-3214732,3214835-3216298
Length = 675
Score = 29.5 bits (63), Expect = 3.1
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +1
Query: 58 LNRSQHDAALPSTTPRQERKSPTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGL 237
++R +H S TPR P D R E+ P + V +DS +L G+
Sbjct: 581 IDREEHKTRTKSRTPRPRADQPADGVGERSNREVAPQ-HPPERTVSLPSDSGNL----GV 635
Query: 238 RRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFR 378
+ + +S ++P SRG V S+PD LA+ + A R
Sbjct: 636 KPKAP--------ARSISMQPDKSRG-IVHPSMPDFDELAARISALR 673
>08_02_1508 +
27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.1 bits (62), Expect = 4.1
Identities = 37/145 (25%), Positives = 52/145 (35%), Gaps = 4/145 (2%)
Frame = +1
Query: 40 PGAGLSLNR--SQHDAALPSTTPRQERKSPTDYSEPRHRTELYPDLRSRDARVKKKTDSI 213
P AG+ SQ + LPS T RQ++ SP S TE P A +K S
Sbjct: 266 PSAGMISTSFSSQREQPLPSETIRQDKPSPRKESNFFTTTEKTPSTPRSRAPTTQKQPSS 325
Query: 214 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRH--NP 387
P+ + R + + K + S T S D + L+ +A H
Sbjct: 326 TFFTPSTTPKIPQRTDTDISSSKDAPYQTKPS--ETTSKEAHDKSHLSGFFKARSHTDET 383
Query: 388 ADGSFXXXXXXXXXXTKCPKLRFLS 462
A + TK PK R +S
Sbjct: 384 ATPTKHSPQEDSKTSTKIPKTRDIS 408
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 503 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 339
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 338 GKDMLTVEPRESGGSK 291
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 365 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 192
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 191 TRASR 177
TRA+R
Sbjct: 64 TRAAR 68
>01_06_0806 - 32123513-32123905
Length = 130
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 100 PRQERKS-PTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGL 237
P Q R + PT+ PRH ++ YP L RD + +RD G+
Sbjct: 29 PYQARYAIPTNNDLPRHGSDTYPSLTCRDTPPRCWDMDPPVRDTGGV 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,650,020
Number of Sequences: 37544
Number of extensions: 479938
Number of successful extensions: 1345
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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