Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D21
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 162 SIILFLNKKDLFEEK--IRRSPLTICFPEYTGAQ 67
           +++ F+NK D +EE   +   PL I   +Y G +
Sbjct: 80  NVLYFINKNDKYEENTILTTMPLLINVVKYLGGK 113


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 518 TSTNSTTPLNISWTTSTG 465
           T+T S  PLNI W+T+ G
Sbjct: 53  TATGSP-PLNIDWSTADG 69


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 518 TSTNSTTPLNISWTTSTG 465
           T+T S  PLNI W+T+ G
Sbjct: 53  TATGSP-PLNIDWSTADG 69


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 521 ERPKHS*TPESAQSLFIAARSSSLNGS 601
           E  ++S  P+S   L +++R S +NG+
Sbjct: 232 ESHQNSNVPKSVAGLNVSSRRSDMNGT 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,980
Number of Sequences: 438
Number of extensions: 4809
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)