Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D16
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649...    31   0.82 
01_06_0581 - 30386018-30386440                                         29   4.4  
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662...    28   7.6  

>01_05_0024 -
           17262504-17263308,17264251-17264399,17264879-17264978,
           17265829-17265953,17267565-17267743,17269648-17270698
          Length = 802

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = +3

Query: 564 PRXNTXPGRQRVCPGPRLPEKTSGNTW--XXGASTXPXGXXXXPP 692
           PR N  P   R  P P +PE     TW    G +T P      PP
Sbjct: 208 PRPNPSPPATRTTPPPPMPEPQMATTWDYFFGPTTTPPPTLEQPP 252


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 270 SGVRSQVLERLEMRLRSGGGGARRQ 344
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>03_05_0705 -
           26965352-26965542,26965732-26965763,26966141-26966235,
           26966737-26966810,26966894-26967029,26967137-26967200,
           26967285-26967350,26967445-26967587,26969314-26969407,
           26969779-26969902,26970016-26970193,26970273-26970395,
           26970884-26970955,26971032-26971139,26972511-26972627,
           26972757-26972889,26973209-26973299,26974642-26974722,
           26975342-26975421,26975500-26975705,26977417-26977893
          Length = 894

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +1

Query: 568 GGTRXX--AASACARGPVFRKRHLGTLGXAE-LPPXPRVXGXXPPTGXDSXXSPXP 726
           GG R     AS+   G   RKR  G L   E   P PR  G  P  G D   +P P
Sbjct: 9   GGRRGGPGGASSVRGGERGRKRGRGALDAVEPRVPLPRGTGSGPGAGRDGAAAPVP 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,520,778
Number of Sequences: 37544
Number of extensions: 243465
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)