Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_D15
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 42 4e-04
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 42 4e-04
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 42 4e-04
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 40 0.002
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 40 0.002
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 40 0.002
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 40 0.002
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 37 0.020
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 37 0.020
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 36 0.026
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 36 0.026
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 36 0.026
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 36 0.026
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 36 0.026
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 36 0.035
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 36 0.035
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 34 0.14
Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z70270-2|CAA94228.1| 445|Caenorhabditis elegans Hypothetical pr... 33 0.25
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 33 0.32
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 32 0.43
Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical pr... 32 0.57
Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical p... 32 0.57
U40948-4|AAA81730.2| 517|Caenorhabditis elegans Hypothetical pr... 32 0.57
AY849796-1|AAW34234.1| 517|Caenorhabditis elegans acetylcholine... 32 0.57
AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical... 32 0.57
AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical ... 32 0.57
Z49888-6|CAD44128.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z49888-5|CAA90065.2| 409|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z47069-5|CAD44131.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z47069-4|CAA87339.2| 409|Caenorhabditis elegans Hypothetical pr... 31 0.99
AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic ace... 31 0.99
AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ... 31 0.99
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.99
AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinate... 31 0.99
Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic acety... 31 1.3
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 31 1.3
U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine r... 31 1.3
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 31 1.3
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 31 1.3
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 31 1.3
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 31 1.3
Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical p... 30 1.7
AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic ace... 30 1.7
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 30 1.7
Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical pr... 30 2.3
U64840-1|AAB04959.2| 484|Caenorhabditis elegans Glutamate-gated... 29 4.0
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 29 4.0
AJ243914-1|CAB51708.1| 484|Caenorhabditis elegans Glutamate-gat... 29 4.0
AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine... 29 4.0
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 29 5.3
AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical ... 29 5.3
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 29 5.3
AC006618-5|ABB88234.1| 513|Caenorhabditis elegans Gaba/glycine ... 28 7.0
AC006618-4|ABB88233.1| 546|Caenorhabditis elegans Gaba/glycine ... 28 7.0
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 28 9.2
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFVIDKRI-YS 513
+ + G+V W+ + + ++ +P D Q C+ FGS +N DE +DF+ R+ +S
Sbjct: 145 ILSTGTVLWVPPAIYKSSCIIDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFS 204
Query: 512 MFE-SGAWDVTALSSAVQSQDRGEVEARV 429
+ S WD+ AV + DR +E ++
Sbjct: 205 EYSTSSIWDMMD-GPAVLTSDRSRIEFQI 232
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFVIDKRI-YS 513
+ + G+V W+ + + ++ +P D Q C+ FGS +N DE +DF+ R+ +S
Sbjct: 145 ILSTGTVLWVPPAIYKSSCIIDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFS 204
Query: 512 MFE-SGAWDVTALSSAVQSQDRGEVEARV 429
+ S WD+ AV + DR +E ++
Sbjct: 205 EYSTSSIWDMMD-GPAVLTSDRSRIEFQI 232
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFVIDKRI-YS 513
+ + G+V W+ + + ++ +P D Q C+ FGS +N DE +DF+ R+ +S
Sbjct: 145 ILSTGTVLWVPPAIYKSSCIIDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDRVDFS 204
Query: 512 MFE-SGAWDVTALSSAVQSQDRGEVEARV 429
+ S WD+ AV + DR +E ++
Sbjct: 205 EYSTSSIWDMMD-GPAVLTSDRSRIEFQI 232
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -1
Query: 683 VFNXGSVSWIK-RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
++ G+V WI RL + +P ++ L +P D QTC F S HNS+E++
Sbjct: 141 LYENGTV-WINHRLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -1
Query: 683 VFNXGSVSWIK-RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
++ G+V WI RL + +P ++ L +P D QTC F S HNS+E++
Sbjct: 141 LYENGTV-WINHRLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -1
Query: 683 VFNXGSVSWIK-RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
++ G+V WI RL + +P ++ L +P D QTC F S HNS+E++
Sbjct: 141 LYENGTV-WINHRLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -1
Query: 683 VFNXGSVSWIK-RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
++ G+V WI RL + +P ++ L +P D QTC F S HNS+E++
Sbjct: 141 LYENGTV-WINHRLSVKSPCNLDLRQFPFDTQTCILIFESYSHNSEEVE 188
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 36.7 bits (81), Expect = 0.020
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN---SDEMDFVIDKRIYS 513
V G+V+WI I + ++ + +P D Q CT KFGS ++ +D ++ I Y
Sbjct: 131 VLYTGNVTWIPPAIIRSSCAIDIAYFPFDTQHCTMKFGSWTYSGFFTDLINTTISPATYK 190
Query: 512 MFESGAWDVTALSS 471
+G W++ L+S
Sbjct: 191 --PNGEWELLGLTS 202
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 36.7 bits (81), Expect = 0.020
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN---SDEMDFVIDKRIYS 513
V G+V+WI I + ++ + +P D Q CT KFGS ++ +D ++ I Y
Sbjct: 131 VLYTGNVTWIPPAIIRSSCAIDIAYFPFDTQHCTMKFGSWTYSGFFTDLINTTISPATYK 190
Query: 512 MFESGAWDVTALSS 471
+G W++ L+S
Sbjct: 191 --PNGEWELLGLTS 202
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 36.3 bits (80), Expect = 0.026
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = -1
Query: 671 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFV----IDKRIYSM 510
G + W+ + + ++ +P D Q CT FGS +N +E ++FV +D YS
Sbjct: 141 GDMLWVPPAIYKSSCIIDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS- 199
Query: 509 FESGAWDVTAL-SSAVQSQDRGEVEARV 429
S WDV + +S V + R E + R+
Sbjct: 200 -ASSIWDVIDVPASLVNKRSRIEFQVRI 226
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 36.3 bits (80), Expect = 0.026
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = -1
Query: 671 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFV----IDKRIYSM 510
G + W+ + + ++ +P D Q CT FGS +N +E ++FV +D YS
Sbjct: 141 GDMLWVPPAIYKSSCIIDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS- 199
Query: 509 FESGAWDVTAL-SSAVQSQDRGEVEARV 429
S WDV + +S V + R E + R+
Sbjct: 200 -ASSIWDVIDVPASLVNKRSRIEFQVRI 226
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 36.3 bits (80), Expect = 0.026
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Frame = -1
Query: 671 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFV----IDKRIYSM 510
G + W+ + + ++ +P D Q CT FGS +N +E ++FV +D YS
Sbjct: 141 GDMLWVPPAIYKSSCIIDVEFFPFDEQVCTLVFGSWTYNENEIKLEFVQAELVDVSEYS- 199
Query: 509 FESGAWDVTAL-SSAVQSQDRGEVEARV 429
S WDV + +S V + R E + R+
Sbjct: 200 -ASSIWDVIDVPASLVNKRSRIEFQVRI 226
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -1
Query: 665 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF-VIDKRIYSMFESGAWD 489
V + K +D++ P+S+ ++P D+Q C +FGS + + + F V+D + ++ WD
Sbjct: 149 VDFNKLVDLTCPMSVL--SFPFDVQLCALQFGSWSYQAHAISFNVLDTFVPKKSKNSEWD 206
Query: 488 VTALSSAVQSQDRGE 444
+ + ++ + G+
Sbjct: 207 IVSFNATKMTTKYGD 221
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -1
Query: 665 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF-VIDKRIYSMFESGAWD 489
V + K +D++ P+S+ ++P D+Q C +FGS + + + F V+D + ++ WD
Sbjct: 149 VDFNKLVDLTCPMSVL--SFPFDVQLCALQFGSWSYQAHAISFNVLDTFVPKKSKNSEWD 206
Query: 488 VTALSSAVQSQDRGE 444
+ + ++ + G+
Sbjct: 207 IVSFNATKMTTKYGD 221
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 35.9 bits (79), Expect = 0.035
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM-----DFVIDKRI 519
V + G V+W+ + + ++ +P D Q CT FGS +NS+E+ + + ++
Sbjct: 167 VDHHGDVTWVPPAMFKSSCRIDVEWFPFDEQCCTLVFGSWTYNSEEVRLHWYNNIQAVQL 226
Query: 518 YSMFESGAWDV 486
+ SG WDV
Sbjct: 227 HDYSYSGIWDV 237
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 35.9 bits (79), Expect = 0.035
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM-----DFVIDKRI 519
V + G V+W+ + + ++ +P D Q CT FGS +NS+E+ + + ++
Sbjct: 167 VDHHGDVTWVPPAMFKSSCRIDVEWFPFDEQCCTLVFGSWTYNSEEVRLHWYNNIQAVQL 226
Query: 518 YSMFESGAWDV 486
+ SG WDV
Sbjct: 227 HDYSYSGIWDV 237
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 531
V+N G V+WI M + +P D Q C KFGS ++ +D I
Sbjct: 74 VYNTGEVNWIPPGIFRASCKMDITYFPFDDQVCYLKFGSWTYHGLALDLSI 124
>Z77656-4|CAH04701.1| 536|Caenorhabditis elegans Hypothetical
protein F07B10.5 protein.
Length = 536
Score = 33.5 bits (73), Expect = 0.19
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -1
Query: 671 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF 537
G++ + R+ + M + +P D Q C GS ++SDE+ +
Sbjct: 176 GTILYSSRITVKAKCQMDMSRYPLDKQACRLVIGSYAYSSDEVQY 220
>Z82059-5|CAB04879.2| 408|Caenorhabditis elegans Hypothetical
protein T27E9.9 protein.
Length = 408
Score = 33.1 bits (72), Expect = 0.25
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
++++ GS+ R+ ++ P S L +P D Q C + S HN+D++
Sbjct: 159 QIYSNGSIWHNYRIKLTGPCSSTLRTFPIDQQRCMLFYESFTHNTDQV 206
>Z70270-2|CAA94228.1| 445|Caenorhabditis elegans Hypothetical
protein C53D6.3 protein.
Length = 445
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
+F G+V R+ + P S+ L N+P D+Q C+ + S +N E++
Sbjct: 159 LFPNGTVMVNYRVRVKGPCSLDLSNFPLDLQKCSLIYESFNYNRQEVE 206
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 32.7 bits (71), Expect = 0.32
Identities = 21/91 (23%), Positives = 33/91 (36%)
Frame = -1
Query: 812 WNPRGXGXQXLXWGPRNACGGXXXVLXKRGCNHPPGXTLSAPRVFNXGSVSWIKRLDIST 633
WNP G P + VL P S ++ + G V W +
Sbjct: 92 WNPTDWGGVEYIHIPSDQIWIPDIVLYNNADGEPHITITSLAKIDHHGRVVWQPPSIYKS 151
Query: 632 PISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
+ + +P D QTC KFG ++ + +D
Sbjct: 152 FCPINIKYFPYDWQTCEMKFGGWSNDGETLD 182
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/93 (21%), Positives = 35/93 (37%)
Frame = -1
Query: 812 WNPRGXGXQXLXWGPRNACGGXXXVLXKRGCNHPPGXTLSAPRVFNXGSVSWIKRLDIST 633
WNP G L P +L P + V G V+W +
Sbjct: 69 WNPDEFGNITLMHFPGEMLWLPDIILYNNAHGSPWVSETTQVHVSFEGRVTWQPPVVYDA 128
Query: 632 PISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 534
++ ++ +P D+Q C KFGS + +++ +
Sbjct: 129 FCNIDIEWYPYDLQICELKFGSWTYGGSQLNLI 161
>Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSM- 510
RV G V + + + + +P D+Q C+ FGS H++D + + + + S+
Sbjct: 63 RVNYTGQVRYYIPFSSESLCKLDVKFFPFDVQQCSLLFGSWAHSNDSIKYSLYSQNLSLI 122
Query: 509 --FESGAWDVTALSSAVQS 459
+++ W++ +S+V S
Sbjct: 123 DFYDNQEWELDTHNSSVHS 141
>Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 31.9 bits (69), Expect = 0.57
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSM- 510
RV G V + + + + +P D+Q C+ FGS H++D + + + + S+
Sbjct: 63 RVNYTGQVRYYIPFSSESLCKLDVKFFPFDVQQCSLLFGSWAHSNDSIKYSLYSQNLSLI 122
Query: 509 --FESGAWDVTALSSAVQS 459
+++ W++ +S+V S
Sbjct: 123 DFYDNQEWELDTHNSSVHS 141
>U40948-4|AAA81730.2| 517|Caenorhabditis elegans Hypothetical
protein F55D10.5 protein.
Length = 517
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 683 VFNXGSVSWIK-RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
++ G+V W+ R+ + P SM +P D Q+C S +N+ E+D
Sbjct: 173 IYPNGTV-WVNYRVQVKGPCSMDFSAFPMDQQSCHLTLESFSYNNQEVD 220
>AY849796-1|AAW34234.1| 517|Caenorhabditis elegans
acetylcholine-gated chloride channelsubunit ACC-3
protein.
Length = 517
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -1
Query: 683 VFNXGSVSWIK-RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
++ G+V W+ R+ + P SM +P D Q+C S +N+ E+D
Sbjct: 173 IYPNGTV-WVNYRVQVKGPCSMDFSAFPMDQQSCHLTLESFSYNNQEVD 220
>AL110485-27|CAB60369.3| 515|Caenorhabditis elegans Hypothetical
protein Y46G5A.26a protein.
Length = 515
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFV 534
R+ N GS+ + +RL + M L +P D Q C F S + +D++ ++
Sbjct: 185 RLRNNGSILYSRRLSLILTCGMDLTLFPFDTQLCKMGFESYGYTADKVKYL 235
>AC006816-3|AAK85510.3| 508|Caenorhabditis elegans Hypothetical
protein Y71D11A.5 protein.
Length = 508
Score = 31.9 bits (69), Expect = 0.57
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
++ G+V RL + P M L +P D TC+ F S +N+DE+
Sbjct: 172 IYANGTVWTNYRLKLQGPCIMDLTKFPFDNVTCSLTFESFNYNTDEV 218
>Z49888-6|CAD44128.1| 428|Caenorhabditis elegans Hypothetical
protein F47A4.1b protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
VF GSV R+ + P M L +P D CT F S +N DE+
Sbjct: 167 VFPNGSVWSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEV 213
>Z49888-5|CAA90065.2| 409|Caenorhabditis elegans Hypothetical
protein F47A4.1a protein.
Length = 409
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
VF GSV R+ + P M L +P D CT F S +N DE+
Sbjct: 148 VFPNGSVWSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEV 194
>Z47069-5|CAD44131.1| 428|Caenorhabditis elegans Hypothetical
protein F47A4.1b protein.
Length = 428
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
VF GSV R+ + P M L +P D CT F S +N DE+
Sbjct: 167 VFPNGSVWSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEV 213
>Z47069-4|CAA87339.2| 409|Caenorhabditis elegans Hypothetical
protein F47A4.1a protein.
Length = 409
Score = 31.1 bits (67), Expect = 0.99
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
VF GSV R+ + P M L +P D CT F S +N DE+
Sbjct: 148 VFPNGSVWSNWRIKSTGPCVMDLTKFPMDSIECTLTFESFNYNKDEV 194
>AF288374-1|AAK83056.1| 502|Caenorhabditis elegans nicotinic
acetylcholine receptoralpha subunit protein.
Length = 502
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/91 (20%), Positives = 36/91 (39%)
Frame = -1
Query: 812 WNPRGXGXQXLXWGPRNACGGXXXVLXKRGCNHPPGXTLSAPRVFNXGSVSWIKRLDIST 633
W+P G + + P + VL + ++ ++ G+V W +
Sbjct: 90 WDPVEYGGVEVLYVPSDTIWLPDVVLYNNADGNYQVTIMTKAKLTYNGTVEWAPPAIYKS 149
Query: 632 PISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
+ ++ +P D Q C KFGS + E+D
Sbjct: 150 MCQIDVEFFPFDRQQCEMKFGSWTYGGLEVD 180
>AF047656-7|AAC05108.2| 462|Caenorhabditis elegans Ligand-gated ion
channel protein 6 protein.
Length = 462
Score = 31.1 bits (67), Expect = 0.99
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -1
Query: 641 ISTPISMQLDNWPNDMQTCTFKFGS 567
+S+P +++DN+P D+Q C GS
Sbjct: 148 VSSPCPLEIDNFPYDVQKCNISMGS 172
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 680 FNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMF-E 504
++ G+++W+ + + +P D Q C FKFGS + D++ +S F
Sbjct: 129 YHTGNINWMPPGIFKVSCKLDIYWFPFDEQVCYFKFGSWTYTRDKIQLEKGDFDFSEFIP 188
Query: 503 SGAW 492
+G W
Sbjct: 189 NGEW 192
>AC006708-21|AAF60421.3| 502|Caenorhabditis elegans Uncoordinated
protein 63 protein.
Length = 502
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/91 (20%), Positives = 36/91 (39%)
Frame = -1
Query: 812 WNPRGXGXQXLXWGPRNACGGXXXVLXKRGCNHPPGXTLSAPRVFNXGSVSWIKRLDIST 633
W+P G + + P + VL + ++ ++ G+V W +
Sbjct: 90 WDPVEYGGVEVLYVPSDTIWLPDVVLYNNADGNYQVTIMTKAKLTYNGTVEWAPPAIYKS 149
Query: 632 PISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
+ ++ +P D Q C KFGS + E+D
Sbjct: 150 MCQIDVEFFPFDRQQCEMKFGSWTYGGLEVD 180
>Y08637-1|CAA69927.1| 487|Caenorhabditis elegans nicotinic
acetylcholine receptorsubunit ACR-3 protein.
Length = 487
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFVIDKR---I 519
V + G + W+ + + ++ +P D Q C+ FGS DE + ++ KR +
Sbjct: 133 VEHTGDMLWVPPAVYKSSCLIDVEFFPFDEQVCSLTFGSWTFRKDELQLSYLSGKRHVEL 192
Query: 518 YSMFESGAWDV 486
SG WD+
Sbjct: 193 NDYLPSGVWDL 203
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
V++ G V W+ + + +P D Q C FKFGS ++ ++D
Sbjct: 129 VYSTGLVHWVPPGIFKISCKIDIQWFPFDEQKCFFKFGSWTYDGYKLD 176
>U23525-2|AAK71378.1| 487|Caenorhabditis elegans Acetylcholine
receptor protein 3 protein.
Length = 487
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDE--MDFVIDKR---I 519
V + G + W+ + + ++ +P D Q C+ FGS DE + ++ KR +
Sbjct: 133 VEHTGDMLWVPPAVYKSSCLIDVEFFPFDEQVCSLTFGSWTFRKDELQLSYLSGKRHVEL 192
Query: 518 YSMFESGAWDV 486
SG WD+
Sbjct: 193 NDYLPSGVWDL 203
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
V++ G V W+ + + +P D Q C FKFGS ++ ++D
Sbjct: 129 VYSTGLVHWVPPGIFKISCKIDIQWFPFDEQKCFFKFGSWTYDGYKLD 176
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 725 GCNHPPGXTLSAPRVFNX-GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSR 564
G PG S N G + +TP Q +++PNDMQ +KF +
Sbjct: 150 GSTSNPGQVTSKVLAANYTGQIYLWSDFSFTTPFRFQYEDYPNDMQRVCYKFDDK 204
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
V++ G V W+ + + +P D Q C FKFGS ++ ++D
Sbjct: 129 VYSTGLVHWVPPGIFKISCKIDIQWFPFDEQKCFFKFGSWTYDGYKLD 176
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
V++ G V W+ + + +P D Q C FKFGS ++ ++D
Sbjct: 129 VYSTGLVHWVPPGIFKISCKIDIQWFPFDEQKCFFKFGSWTYDGYKLD 176
>Z93397-1|CAB07719.3| 550|Caenorhabditis elegans Hypothetical
protein ZC482.1 protein.
Length = 550
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
R+ G V++ RL + SM L N+P D Q CT + S + + E+
Sbjct: 161 RINVDGKVAYGMRLTSTLSCSMNLRNFPLDSQNCTVEIESYGYTTSEV 208
>Z36753-16|CAA85338.2| 538|Caenorhabditis elegans Hypothetical
protein T09A5.3 protein.
Length = 538
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 680 FNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 528
++ G ++WI M + +P D Q C KFGS ++ +D +D
Sbjct: 143 YSDGVINWIPPGIFKLSCKMDITLFPFDEQICFMKFGSWTYHGFALDLRLD 193
>AF187012-1|AAG35182.1| 538|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-7 protein.
Length = 538
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 680 FNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 528
++ G ++WI M + +P D Q C KFGS ++ +D +D
Sbjct: 143 YSDGVINWIPPGIFKLSCKMDITLFPFDEQICFMKFGSWTYHGFALDLRLD 193
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDKR---IYS 513
V+ G V+W+ +Q+ +P D+Q C KFGS + +++ ID I +
Sbjct: 132 VYPNGLVNWMPPGLYRLSCKIQVVWFPFDVQECFLKFGSWTFDGTKLNLEIDDNGFDISN 191
Query: 512 MFESGAW 492
++G W
Sbjct: 192 YMQNGEW 198
>Z50029-2|CAA90341.3| 537|Caenorhabditis elegans Hypothetical
protein ZC504.2 protein.
Length = 537
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/91 (24%), Positives = 34/91 (37%)
Frame = -1
Query: 812 WNPRGXGXQXLXWGPRNACGGXXXVLXKRGCNHPPGXTLSAPRVFNXGSVSWIKRLDIST 633
W+P G P + +L P +S V+ G V W +
Sbjct: 88 WDPGRWGKIRKLHVPVDQIWIPDILLYNNADGEPHITIMSDAIVYYNGLVVWKPPSIYKS 147
Query: 632 PISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
S+ ++ +P D QTC KFG +N +D
Sbjct: 148 FCSIDIEYFPYDTQTCWMKFGGWTYNGFLLD 178
>U64840-1|AAB04959.2| 484|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 3 protein.
Length = 484
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF 537
R+ G + + R+ + M L +P D+QTC S + +++++
Sbjct: 142 RIHRDGRILYSVRISMVLSCPMHLQYYPMDVQTCLIDLASYAYTENDIEY 191
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 650 RLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
RL++ TP S+ L +P D +C S N+DE+
Sbjct: 135 RLNVKTPCSVNLKMFPFDSLSCEIVLESYSFNTDEV 170
>AJ243914-1|CAB51708.1| 484|Caenorhabditis elegans Glutamate-gated
chloride channelsubunit protein.
Length = 484
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/50 (22%), Positives = 24/50 (48%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF 537
R+ G + + R+ + M L +P D+QTC S + +++++
Sbjct: 142 RIHRDGRILYSVRISMVLSCPMHLQYYPMDVQTCLIDLASYAYTENDIEY 191
>AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine
receptor protein 21 protein.
Length = 469
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = -1
Query: 671 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVI 531
G++ W ++ + + ++P D QTC K+ S ++ ++D ++
Sbjct: 111 GNIHWPLSAIFTSSCPLDVKHYPFDRQTCILKYASWAYDGTKIDLLL 157
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 680 FNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 528
++ G+V WI + + + +P D Q C KFGS + +D ID
Sbjct: 135 YHTGTVVWIPPGVLKFVCQLDVTWFPFDDQVCEMKFGSWTFHGYAIDLQID 185
>AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical
protein C04C3.2 protein.
Length = 464
Score = 28.7 bits (61), Expect = 5.3
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = -1
Query: 686 RVFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF-VIDKRIYSM 510
R+ + G V +ST + +D +P D Q C S + + +EMD + S
Sbjct: 147 RIQHTGHVKVNSPQFVSTLCRINIDLFPFDTQFCAIALASPLLSVEEMDVNATQPPVDSY 206
Query: 509 FESGA-WDVTALS-SAVQSQDRGEVEARV 429
F A W V ++ ++ + GE A V
Sbjct: 207 FSGNAEWQVMNVTVKQMKFMEEGEYRAEV 235
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -1
Query: 665 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDF 537
V + K +D+ P+S+ ++P D+Q C +FGS + S + F
Sbjct: 142 VDFNKLIDLICPMSVL--SFPFDVQLCALQFGSWTYQSHALSF 182
>AC006618-5|ABB88234.1| 513|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 2, isoform b protein.
Length = 513
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -1
Query: 671 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
GS+ + R+ + ++ L+ WP D Q C + S + ++++
Sbjct: 142 GSILYDTRISMVVVCTLNLEKWPLDSQRCHLRILSYAYTTEQL 184
>AC006618-4|ABB88233.1| 546|Caenorhabditis elegans Gaba/glycine
receptor family (seegbr) protein 2, isoform a protein.
Length = 546
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -1
Query: 671 GSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEM 543
GS+ + R+ + ++ L+ WP D Q C + S + ++++
Sbjct: 142 GSILYDTRISMVVVCTLNLEKWPLDSQRCHLRILSYAYTTEQL 184
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 683 VFNXGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMD 540
V + G+V+W+ + +++ +P D Q C KF S H+ E++
Sbjct: 220 VTSDGNVTWLFSALFRSSCPIRVRYYPFDDQQCDLKFASWSHDITEIN 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,599,657
Number of Sequences: 27780
Number of extensions: 260092
Number of successful extensions: 657
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -