Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_D13
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 32 0.45
06_02_0151 - 12299935-12300189,12300713-12300986,12301072-123013... 31 0.79
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 31 1.0
05_06_0122 - 25775652-25775936,25776027-25776103,25776177-257762... 30 1.8
07_03_1389 + 26212117-26212119,26212721-26212875,26213402-262134... 29 4.2
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380... 29 4.2
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 29 5.5
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272... 29 5.5
05_01_0570 + 5061600-5062142,5062790-5062972 29 5.5
04_01_0296 + 3927741-3927960,3928257-3928900 29 5.5
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984... 28 7.3
04_04_1330 - 32700333-32700770 28 7.3
02_05_0781 + 31715100-31715672 28 7.3
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 28 9.7
08_01_0554 - 4851698-4851943,4852041-4852760 28 9.7
05_07_0104 + 27715123-27715350 28 9.7
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 138 HPLNDSPALLHPTSDLRPGSEPVQSRGVPAVNTTTRHAAPPR--GRPTDGSSRR*STT 305
HP + P L TS+ +PG PV++ G+ + +T R PPR G P S R S++
Sbjct: 405 HP--EGPKLHAITSESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSS 460
>06_02_0151 -
12299935-12300189,12300713-12300986,12301072-12301378,
12301467-12301714,12303181-12303480,12303564-12303620,
12304831-12304940,12305053-12305382
Length = 626
Score = 31.5 bits (68), Expect = 0.79
Identities = 20/46 (43%), Positives = 23/46 (50%)
Frame = +2
Query: 488 SQSAAADAPSRPPGASALK*R*RAAQPQPLRLPVXITGRRLPPHRG 625
S S + +P S+L R RA P PL LP T RRLP RG
Sbjct: 6 SSSLFSSSPLPTALLSSLTRRARALLPLPLPLPAASTRRRLPLRRG 51
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +2
Query: 161 TLTPDVRSPSGVRTRSE*GGSRGQHYNQTRGATPRTPDRR 280
TLTP RSPS R S G N TRGA+P +RR
Sbjct: 151 TLTPPRRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>05_06_0122 -
25775652-25775936,25776027-25776103,25776177-25776281,
25776353-25776542,25776617-25776804,25776882-25777191
Length = 384
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +1
Query: 241 PDTRRHPEDARP-TGRRGDSRRPTTSVSAVRRPYQAARAVPLVFRDTPLGQNQPAGSERD 417
P HP D +P T S P T Q+A A ++ P G AG +
Sbjct: 11 PSVEDHPSDNQPATDNVEPSNEPPTG-------NQSAEAEVGANQEPPTGNQSDAGPSQK 63
Query: 418 TPPTGLLFNSMFGDDSDDEN 477
P NS G D+D E+
Sbjct: 64 VPEVEAQTNSPLGKDADSES 83
>07_03_1389 +
26212117-26212119,26212721-26212875,26213402-26213479,
26214211-26214375,26214453-26214554,26214661-26214786,
26215454-26215490
Length = 221
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 179 RSPSGVRTRSE*GGSRGQHYNQTRGATPR 265
+ PS +R+R GSRG+ Y+Q +PR
Sbjct: 122 KKPSEMRSRDRISGSRGRSYDQRYSRSPR 150
>04_03_0655 +
18436363-18436901,18436984-18437772,18437952-18438028,
18438034-18438248
Length = 539
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 40 LRGPRA*GARGVCETQRSAGVESRSRAQGILGPTH*TTPLHSYTRRPISVRGQNP 204
L+GPR G R G + +R + +L P H P R + + NP
Sbjct: 231 LQGPRPGGGRATAIVGGGGGADHGARRRALLVPRHPAEPRRRAGRPGVCIHDANP 285
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 198 EPVQSRGVPAVNTTTRHAAPPRGRPTDGSS 287
E + +RG T +HA PPRG P G +
Sbjct: 119 EKMMTRGRAETETARKHAPPPRGLPLLGEA 148
>08_02_0154 -
13324384-13325351,13326306-13326502,13326695-13327274,
13328324-13328446,13328803-13329130
Length = 731
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 84 STICRC*EQIAGPRXFRAHPLNDSPALLHPTSDLRPGSEPVQSRGV 221
ST CRC Q+ HP D P L S+ +PG PV++ G+
Sbjct: 645 STPCRCMRQVGSQLGM--HP--DGPKLDVTVSESQPGQVPVRTSGM 686
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 211 VGGFPRSTLQPDTRRHPEDARPTGRRGDSRRPTTS 315
VGG ++ RR P TG G +RRPT++
Sbjct: 159 VGGARGRAVRGSARRRPRKEETTGINGTARRPTST 193
>04_01_0296 + 3927741-3927960,3928257-3928900
Length = 287
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +3
Query: 42 TRSPRLGGARGM*DSTICRC*EQIAGPRXFRAHPLNDSPALLHPTSDLRPGSEPVQSRGV 221
TR+ G ST CRC Q+ R P D P L TS+ + G PV++ GV
Sbjct: 210 TRNVARKEREGSSSSTPCRCMRQVG--RQLGMRP--DGPKLHATTSESQAGQVPVRTGGV 265
>08_02_0146 -
13195691-13196658,13197613-13197809,13198002-13198479,
13199660-13199782,13200139-13200466
Length = 697
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 84 STICRC*EQIAGPRXFRAHPLNDSPALLHPTSDLRPGSEPVQSRGV 221
ST CRC Q+ HP D P L S+ +PG PV++ G+
Sbjct: 611 STPCRCMRQVGSQLGM--HP--DGPKLDVTVSESQPGQVPVRTGGM 652
>04_04_1330 - 32700333-32700770
Length = 145
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 179 RSPSGVRTRSE*GGSRGQHYNQTRGATPRTPDRRVVEAIVDDQR 310
R G E GG R +H + A+P P+R VV + + +R
Sbjct: 22 RRRGGGSDGEELGGGRDEHEGERERASPVEPEREVVGVVGERER 65
>02_05_0781 + 31715100-31715672
Length = 190
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 204 VQSRGVPAVNTTTRHAAPPRGRPTDGSSRR*STT 305
V + P RHAA P RP+ +SRR STT
Sbjct: 51 VSAAAQPQRAAKKRHAAAPPPRPSASTSRRSSTT 84
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -1
Query: 414 AFRPGRLVLAQRGIPEHQRHRPGGLVGPPYRG 319
AFR L A RG E Q+ GG GP YRG
Sbjct: 47 AFRYEALSAATRGFSERQKLGQGGF-GPVYRG 77
>08_01_0554 - 4851698-4851943,4852041-4852760
Length = 321
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 346 ARAVPLVFRDTPLGQNQPAG-SERDTPPTGLLFNSMFGDD 462
AR + F D LG N PAG E DTP LL F DD
Sbjct: 164 ARERGMSFGDALLGNNHPAGLREIDTP---LLDEKFFSDD 200
>05_07_0104 + 27715123-27715350
Length = 75
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 305 GRRLSPRRPVGRASSGWRRVS 243
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,160,851
Number of Sequences: 37544
Number of extensions: 475355
Number of successful extensions: 1632
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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