Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D09
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    75   9e-15
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    27   4.2  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 75.4 bits (177), Expect = 9e-15
 Identities = 35/56 (62%), Positives = 44/56 (78%)
 Frame = -1

Query: 701 KLWXLLTLXSFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSAAERLLAA 534
           K +  ++  SFE +DAAIEAMNNQ+  N+PI+VSYAFK++ KGERHG  AER LAA
Sbjct: 140 KGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAA 195


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 3   FFFFFLQNYTIYFSPFPI 56
           F FF  Q + +YFS FPI
Sbjct: 135 FLFFLSQIFIVYFSSFPI 152


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 508 CPHAIMDFCAASNLSAAXPCLSPFTSFLNA 597
           C   I +F A SN  A  PC S   +F+N+
Sbjct: 85  CSTPICEFNAVSNSQANHPCCSNCRAFINS 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,501
Number of Sequences: 5004
Number of extensions: 23255
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)