Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_D09
(815 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein prot... 97 5e-20
BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b, sub... 97 5e-20
BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b, sub... 97 5e-20
BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b, sub... 97 5e-20
AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b, sub... 97 5e-20
AL591493-1|CAI12553.1| 190|Homo sapiens splicing factor 3b, sub... 97 5e-20
AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b, sub... 97 5e-20
AL590487-1|CAI12647.1| 190|Homo sapiens splicing factor 3b, sub... 97 5e-20
AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b, sub... 97 5e-20
>L35013-1|AAA60300.1| 424|Homo sapiens spliceosomal protein
protein.
Length = 424
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 107 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 165 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 109 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 168 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>BC090883-1|AAH90883.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 107 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 165 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 109 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 168 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>BC013886-1|AAH13886.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 107 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 165 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 109 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 168 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>BC004273-1|AAH04273.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 107 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 165 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 109 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 168 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>AL591493-2|CAI12554.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 107 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 165 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 109 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 168 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>AL591493-1|CAI12553.1| 190|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 190
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 64 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 121
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 122 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 158
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 66 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 124
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 125 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 178
>AL590487-2|CAI12648.1| 424|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 424
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 107 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 165 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 109 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 168 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
>AL590487-1|CAI12647.1| 190|Homo sapiens splicing factor 3b,
subunit 4, 49kDa protein.
Length = 190
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 64 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 121
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 122 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 158
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 66 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 124
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 125 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 178
>AK223322-1|BAD97042.1| 424|Homo sapiens splicing factor 3b,
subunit 4 variant protein.
Length = 424
Score = 97.5 bits (232), Expect = 5e-20
Identities = 56/97 (57%), Positives = 65/97 (67%)
Frame = -1
Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
L+P K++Y T F GVILQ T + K + + SF+ASDAAIEAMN
Sbjct: 107 LDPEIDEKLLYDT-FSAFGVILQ-TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
QY CNRPI+VSYAFKKD KGERHGSAAERLLAAQ +
Sbjct: 165 QYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPL 201
Score = 52.8 bits (121), Expect = 1e-06
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Frame = -2
Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXH--LRPRMQQLK-Q*I 635
PE+ KL + + PK+M DP+TG K + F ++ + Q +
Sbjct: 109 PEIDEKLLYDTFSAFGVIL-QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAPPTLMGP 461
+ +T Y F ++ KG L +NPLS ADRPHQLFADAPP P
Sbjct: 168 CNRPITVSYAF----KKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAP 221
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,930,050
Number of Sequences: 237096
Number of extensions: 889008
Number of successful extensions: 1446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10147868276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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