Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D09
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    87   1e-17
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    87   1e-17

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 49/97 (50%), Positives = 62/97 (63%)
 Frame = -1

Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
           L+P    K++Y T F   GVILQ         +    K +  +   SFEASD A+EAMN 
Sbjct: 107 LDPEVDEKLLYDT-FSAFGVILQVP-KIMRDVDSGTSKGFAFINFASFEASDTALEAMNG 164

Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
           Q+ CNR I+VSYAFK+D KGERHG+AAER+LAAQ  +
Sbjct: 165 QFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPL 201



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = -2

Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXHLRP--RMQQLK-Q*I 635
           PEV  KL          +  + PK+M D ++G  K F F            ++ +  Q +
Sbjct: 109 PEVDEKLLYDTFSAFGVIL-QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL 167

Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAP 479
            +  +T  Y F    +R  KG          L  +NPL   DRPHQ+F+D P
Sbjct: 168 CNRAITVSYAF----KRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVP 215


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 49/97 (50%), Positives = 62/97 (63%)
 Frame = -1

Query: 812 LNP*SXWKVIYXTHFXXXGVILQXT*GNXXS*NREIQKLWXLLTLXSFEASDAAIEAMNN 633
           L+P    K++Y T F   GVILQ         +    K +  +   SFEASD A+EAMN 
Sbjct: 117 LDPEVDEKLLYDT-FSAFGVILQVP-KIMRDVDSGTSKGFAFINFASFEASDTALEAMNG 174

Query: 632 QYXCNRPISVSYAFKKDVKGERHGSAAERLLAAQKSI 522
           Q+ CNR I+VSYAFK+D KGERHG+AAER+LAAQ  +
Sbjct: 175 QFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPL 211



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = -2

Query: 805 PEVXGKLFXXHIXXIXXLYYKXPKVMXDPETGKFKSFGFY*LCXHLRP--RMQQLK-Q*I 635
           PEV  KL          +  + PK+M D ++G  K F F            ++ +  Q +
Sbjct: 119 PEVDEKLLYDTFSAFGVIL-QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFL 177

Query: 634 TSXYVTGRYQFHMHLRRM*KGRGTXQQQRDYLLHKNPLSHADRPHQLFADAP 479
            +  +T  Y F    +R  KG          L  +NPL   DRPHQ+F+D P
Sbjct: 178 CNRAITVSYAF----KRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVP 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,376,316
Number of Sequences: 27780
Number of extensions: 138202
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)