Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D06
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.017
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.36 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 690 PPPPPXXXGGGXGPPPPP 637
           PPPPP   G G  PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 690 PPPPPXXXGGGXGPPPPP 637
           PPPPP     G GPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 34.3 bits (75), Expect = 0.022
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -1

Query: 689 PPPPPXGGGGXXXPPPPP 636
           PPPPP G  G   PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 32.3 bits (70), Expect = 0.089
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 690 PPPPPXXXGGGXGPPPPP 637
           PPPPP    G   PPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 689 PPPPPXGGGGXXXPPPPP 636
           PPPPP   G    PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 31.1 bits (67), Expect = 0.21
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 689 PPPPPXGGGGXXXPPPPP 636
           PPPPP  G     PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -3

Query: 690 PPPPPXXXGGGXGPPPPP 637
           P PPP    GG  PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP 767



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 687 PPPPXXXGGGXGPPPPP 637
           PPP    GG   PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 686 PPPPXGGGGXXXPPPPP 636
           PPP    GG   PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPP 768



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 596 PPPPPXXXXXXXXXGGGGGPXPPPXXXGGGGG 691
           PPPPP         G G  P PPP      GG
Sbjct: 761 PPPPPPPPGVA---GAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 689 PPPPPXGGGGXXXPPPPP 636
           PPPPP G      PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 690 PPPPPXXXGGGXGPPPPP 637
           PPPPP        PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 690 PPPPPXXXGGGXGPPPPP 637
           PPPPP        PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 689 PPPPPXGGGGXXXPPPPP 636
           PPPPP  G      PPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPP 27



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 689 PPPPPXGGGGXXXPPPPP 636
           PPPPP        PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 638 GGGGGPXPPPXXXGGGGG 691
           GG GGP P P   GG GG
Sbjct: 195 GGSGGPPPGPGGFGGFGG 212



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 637 GGGGGXXXPPPPXGGGGG 690
           G GGG   PPP  GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGG 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.147    0.497 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,463
Number of Sequences: 5004
Number of extensions: 27558
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)