Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D02
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   119   6e-28
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   116   5e-27
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    31   0.25 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   3.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   7.2  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  119 bits (286), Expect = 6e-28
 Identities = 55/83 (66%), Positives = 66/83 (79%)
 Frame = -1

Query: 572 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 393
           +AS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197

Query: 392 DVVVDLFFYRDPEESEKDEQQAK 324
           DV+ DL+FYRDPEE E++E+  K
Sbjct: 198 DVMPDLYFYRDPEEVEREEEAKK 220



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = -3

Query: 795 RAXVAIEXPXXVXVISSRPFGQRAVXKFPAHTGXTXIXGTFHTRXFLLTRSKLHSREXRX 616
           R    IE P  V V+S+R +G RAV KF AHTG T I G F    F    ++ + RE R 
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY-REPRL 123

Query: 615 LIVLDPAQDHQPITE-SFI 562
           ++V DP  D Q I E SF+
Sbjct: 124 IVVTDPRADAQAIKEASFV 142


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  116 bits (278), Expect = 5e-27
 Identities = 53/81 (65%), Positives = 65/81 (80%)
 Frame = -1

Query: 572 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 393
           +AS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198

Query: 392 DVVVDLFFYRDPEESEKDEQQ 330
           +V+ DL+FYRDPEE E++E+Q
Sbjct: 199 EVMPDLYFYRDPEEIEREEEQ 219



 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 39/79 (49%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = -3

Query: 795 RAXVAIEXPXXVXVISSRPFGQRAVXKFPAHTGXTXIXGTFHTRXFLLTRSKLHSREXRX 616
           R    IE P  V VISSRP+G RAV KF AHTG T I G F    F    ++ + RE R 
Sbjct: 66  RVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY-REPRL 124

Query: 615 LIVLDPAQDHQPITE-SFI 562
           +IV DP  D Q I E SF+
Sbjct: 125 IIVTDPRADAQAIKEASFV 143


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 575 LKASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 438
           L+A   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 196 LEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 545 IALCNTDSPLRFVDIAIPCNTKSSHSI 465
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 412 FPVTSAGML--WLICSSTVTLKKVKRM 338
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,821,580
Number of Sequences: 5004
Number of extensions: 53358
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)