Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D02
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   104   9e-23
AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical ...    30   2.2  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    29   2.9  
U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    28   6.8  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   8.9  
AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   8.9  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  104 bits (249), Expect = 9e-23
 Identities = 46/87 (52%), Positives = 63/87 (72%), Gaps = 5/87 (5%)
 Frame = -1

Query: 572 KASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 393
           +ASYV +PVI+  NT+SPL+ +DI +PCN K   SIGLMWW+LARE+L LRG + R   +
Sbjct: 136 EASYVGVPVISFVNTESPLKLIDIGVPCNNKGERSIGLMWWMLAREILILRGKISRQTGF 195

Query: 392 -----DVVVDLFFYRDPEESEKDEQQA 327
                +++ DL+FYRDP E+EK+E  A
Sbjct: 196 VLEGKEIMPDLYFYRDPTETEKEETGA 222



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 38/95 (40%), Positives = 52/95 (54%)
 Frame = -3

Query: 795 RAXVAIEXPXXVXVISSRPFGQRAVXKFPAHTGXTXIXGTFHTRXFLLTRSKLHSREXRX 616
           RA  A+E P  V V+S+RP+ QRA+ KF AHTG T I G F +   L  + +   +E R 
Sbjct: 63  RAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRF-SPGCLTNQIQKTFKEPRL 121

Query: 615 LIVLDPAQDHQPITESFICQHSCDCFVQHRLPTKI 511
           L++ DP  DHQ +TE+         FV    P K+
Sbjct: 122 LVISDPRIDHQAVTEASYVGVPVISFVNTESPLKL 156


>AL031633-6|CAA21014.3|  225|Caenorhabditis elegans Hypothetical
           protein Y39A1A.8 protein.
          Length = 225

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -1

Query: 611 LYWTLHKTINPLLKASYVNIPVIAL--CNTDSPLRFVDIAIPCNTKSSHSIGL 459
           +YW  H T + L K +YV    I L  C+  +PL   DI      KSS S+ L
Sbjct: 114 VYWVAHSTNSHLTKTTYVGNYCIFLNICSVAAPL--FDIGKVVRNKSSESLPL 164


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 216 CCTRCSSCFWSTPCSRRMVCP 154
           CCT    CF ST CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U39742-3|AAY86225.1|  188|Caenorhabditis elegans Hypothetical
           protein C25F6.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 536 CNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVL 429
           CNTD+  R +     CNT   + +G+ + L+AR ++
Sbjct: 49  CNTDAEFRLIQCCSSCNT---NGVGIAYDLVARSLV 81


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 564 ICQHSCDCFVQHRLPTKICGHCYPM---QHQVFPLYWFD 457
           +C+HS    +      K CGHC PM   +HQ  P +  D
Sbjct: 342 LCEHSRYKTLMENYCPKACGHCIPMCRDRHQNCPQFHED 380


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 167  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 262
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AL033510-7|CAA22069.1|  124|Caenorhabditis elegans Hypothetical
           protein Y40H7A.11 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 485 TKSSHSIGLMWWLLA 441
           T+  H IG+MWWL A
Sbjct: 72  TRVEHKIGIMWWLCA 86


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +2

Query: 167  LLEQGVLQKQELQRVQQAGRYLQP--MKPLAPVF 262
            L+EQ ++ +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,997,977
Number of Sequences: 27780
Number of extensions: 317598
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)