Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D01
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    28   1.8  
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    28   1.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.4  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    26   7.2  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   9.5  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   9.5  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   9.5  

>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 445 ASEWGVWPLVGVRVPLNATVEPLL 374
           AS WG W L+G+ V L   V+ +L
Sbjct: 163 ASTWGTWGLMGINVVLFVVVQLIL 186


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 223 YFRRVVQPGDVEGHRELVVNANFT 294
           YF   V PG V GH  L VN + T
Sbjct: 173 YFENYVWPGYVHGHSHLFVNGDVT 196


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 703 APXWPXRTXAGSPLPTXPNTTIHXASVAGTTPDFHASFFESKTLAPQANTT 551
           AP  P  + A S LPT P TT + +  A T+   H +  +   L P + +T
Sbjct: 810 APVQPKTSQASSILPTVPRTTSYTSPYATTSS--HITPADVHPLPPPSTST 858


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 280 SQRVPGAPPHHRAALPAGSTGAFP 209
           +Q +P   PH RAALP  + G  P
Sbjct: 158 AQDLPHGLPHRRAALPCEALGFHP 181


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -3

Query: 670 SPLPTXPNTTIHXASVAGTTPDFHASFFESKTLAPQANTTFSVVYL 533
           +PLP  P       SVA T P  H     S  L PQ+ T   + YL
Sbjct: 359 TPLPAVPTVLSGLPSVAYTPPVMHIPTTNS-PLTPQSFTNSFLGYL 403


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -3

Query: 517 PASAHLYIHTSLGVFKYPVSAEGVASEWGVWPLVGVRVPLNATVEPLLTLYNPTAHPVQV 338
           P S   Y + S    K+   A G A     W    V VPL  TV PL+  +   + PV +
Sbjct: 122 PVSGSFYTYFS----KFIDPAWGFAVGIQYWLSFAVTVPLELTVAPLIINFWNASGPVSI 177


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 321 ADEKKALEEREIRVHNEFPVPLHITGLHYPPEVLEHFHHE 202
           A EKK+ EE E  ++    +       +Y  EVLE  H++
Sbjct: 129 AGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQ 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,443
Number of Sequences: 5004
Number of extensions: 43803
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)