Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_D01
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    51   9e-07
07_03_1293 - 25563431-25563545,25564078-25564196,25564300-255644...    31   0.81 
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604...    29   4.3  
04_01_0039 + 455760-457631                                             29   5.7  
02_02_0374 + 9538478-9540385                                           29   5.7  
11_03_0005 - 8871625-8872616,8872807-8872933,8873466-8874209,887...    28   7.6  
06_03_0854 + 25400855-25403741,25406174-25407708                       28   10.0 

>03_01_0611 +
           4493618-4493641,4494705-4494730,4495758-4497471,
           4498179-4499263,4499351-4500296
          Length = 1264

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 27/95 (28%), Positives = 47/95 (49%)
 Frame = -3

Query: 616 TTPDFHASFFESKTLAPQANTTFSVVYLGRHEGPASAHLYIHTSLGVFKYPVSAEGVASE 437
           T P F+   ++   L P+ N + + ++L +  G +SAHL + T+ G F        V S 
Sbjct: 227 TDPQFYVYGYDDLVLQPRENASVTFIFLPKLLGSSSAHLVLQTNFGGFIIQAKGMAVRSP 286

Query: 436 WGVWPLVGVRVPLNATVEPLLTLYNPTAHPVQVTE 332
           + + PL G+ V     +E  L+++NP    + V E
Sbjct: 287 YQLEPLAGMDVITGGRLERNLSIFNPFDDSLYVEE 321


>07_03_1293 -
           25563431-25563545,25564078-25564196,25564300-25564467,
           25564565-25564627,25564709-25564816,25565125-25565237,
           25565313-25565609,25565724-25565802,25566116-25566224,
           25566324-25566365,25567023-25567153,25568100-25568648
          Length = 630

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -2

Query: 398 QRDGGASP--HAVQPHGAPRAGDRVLLQRTKRKPWKNVKFAFTTSSRCPS 255
           + DG  SP     QP   P  G        K KPW +  F F+T S  P+
Sbjct: 13  EADGACSPPRERPQPPATPPRGSGAATPAWKTKPWASPFFGFSTPSPSPA 62


>07_03_0860 +
           22057309-22058453,22059833-22059964,22060328-22060412,
           22061666-22061867,22062273-22062344,22062509-22062573,
           22062682-22062741,22063033-22064379,22064463-22064607,
           22064688-22067442,22068540-22068630,22068655-22068873
          Length = 2105

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 289 NSRSQRVPGAPPHHRAALPAGSTGAFPPRER 197
           +S S +    PP   AA   GS+ AFPPR+R
Sbjct: 11  SSASNQRRSLPPSPAAASSVGSSPAFPPRKR 41


>04_01_0039 + 455760-457631
          Length = 623

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 454 EGVASEWGVWPLVGVRVPLNATVEPLLTLYNP 359
           E VA+E GVWP+V   +    T  P L  Y P
Sbjct: 587 EKVATENGVWPMVEPLMKKGLTTMPYLNDYKP 618


>02_02_0374 + 9538478-9540385
          Length = 635

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 553 SCWLVAPVSLTQRMXHGSQVWCRP 624
           SC +VA  SL + +    Q+WCRP
Sbjct: 410 SCTMVAISSLKEHVNGQEQIWCRP 433


>11_03_0005 -
           8871625-8872616,8872807-8872933,8873466-8874209,
           8874287-8874328,8874898-8874993,8877589-8877662,
           8877681-8878344
          Length = 912

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 342 CTGCAVGLYSVRRGSTVALRGTRTPTSGHTPHSLATPSADTGY 470
           C     GLY  R  + VA  GTRT    H P S  + SA   Y
Sbjct: 724 CEDMPNGLYVAREMTCVAKTGTRTERLEHKPSSRDSFSAPQEY 766


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
 Frame = -3

Query: 727 PPXFGVXGAPXWPX-------RTXAGSPLPTXPNTTIHXASVAGTTPDFHASFFESKTLA 569
           PP     G   WP         T A +PLP  P  T H   +A   P+   S+    + A
Sbjct: 771 PPTLAASGVAAWPPVPAIPELTTAAAAPLPEKPVLTAHDVVMATLFPNGVFSYTAGSSHA 830

Query: 568 P 566
           P
Sbjct: 831 P 831


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,809
Number of Sequences: 37544
Number of extensions: 378539
Number of successful extensions: 1322
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)