Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_D01
(804 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 74 1e-13
Z73974-7|CAL90892.1| 283|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z73974-6|CAL90891.1| 215|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z73974-5|CAA98272.1| 346|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 28 9.0
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 28 9.0
U10081-1|AAA20841.1| 346|Caenorhabditis elegans CEH-22 homeopro... 28 9.0
U10080-1|AAA20840.1| 346|Caenorhabditis elegans CEH-22 homeopro... 28 9.0
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
protein C27F2.8 protein.
Length = 1715
Score = 73.7 bits (173), Expect = 1e-13
Identities = 35/111 (31%), Positives = 62/111 (55%)
Frame = -3
Query: 649 NTTIHXASVAGTTPDFHASFFESKTLAPQANTTFSVVYLGRHEGPASAHLYIHTSLGVFK 470
N I +V + +F AS+FE L P T+ VV+L R G S ++ +TS+GVF
Sbjct: 30 NEQIFLDAVVVNSIEFQASYFEQYKLEPHGVTSLEVVFLPREIGKRSTIVHFYTSVGVFT 89
Query: 469 YPVSAEGVASEWGVWPLVGVRVPLNATVEPLLTLYNPTAHPVQVTEFYYSG 317
Y + ++ + + P G R+P+N+++ + ++NP A+ +++TE SG
Sbjct: 90 YKMQGNCDSNPYRISPFTGYRLPMNSSISKPIVIFNPYAYTMRITEIGTSG 140
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/89 (20%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -1
Query: 297 EREIRVHNEFPVPLHITGLHYPPEVLEHFHHESA-TPLVLGAGEQAXXXXXXXXXXXXXX 121
+R IR+ N+ P + I + PE++ HF ++ +G +
Sbjct: 367 QRIIRIENQLPFDVAIFNITLAPELVSHFSVRLIDRTALIRSGHISPVFVLKYNKKLPPT 426
Query: 120 XLDANVTARTNLTHYTLPLHLYSGQLLLE 34
++ + TN++ + L L Y+G++ +E
Sbjct: 427 FDNSTIYLHTNVSTFNLSLSTYTGRMNVE 455
>Z73974-7|CAL90892.1| 283|Caenorhabditis elegans Hypothetical
protein F29F11.5c protein.
Length = 283
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 420 SGHTPHSLATPSADTGYLNTPSXV--CMXRWAEAGPSCRPRYTT 545
S +P+++A SA++GYL TPS + GPS Y T
Sbjct: 233 SSTSPYTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMT 276
>Z73974-6|CAL90891.1| 215|Caenorhabditis elegans Hypothetical
protein F29F11.5b protein.
Length = 215
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 420 SGHTPHSLATPSADTGYLNTPSXV--CMXRWAEAGPSCRPRYTT 545
S +P+++A SA++GYL TPS + GPS Y T
Sbjct: 165 SSTSPYTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMT 208
>Z73974-5|CAA98272.1| 346|Caenorhabditis elegans Hypothetical
protein F29F11.5a protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 420 SGHTPHSLATPSADTGYLNTPSXV--CMXRWAEAGPSCRPRYTT 545
S +P+++A SA++GYL TPS + GPS Y T
Sbjct: 296 SSTSPYTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMT 339
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 577 TLAPQANTTFSVVYLGRHEGPASAHLYIHTSLGVFKY 467
TL+P A+TT + +Y+G + GP+ A L F Y
Sbjct: 225 TLSPPADTTITTLYIG-NLGPSGAQQVTEKDLNDFFY 260
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -3
Query: 586 ESKTLAPQANTTFSVVYLGRHEGPASAHLYIHTSLGVFKYPVSAEGVASEWGVWPLVGVR 407
E K L + V Y G A + +G+ +P + V ++ W +
Sbjct: 159 EHKMLLEAVRSPIKVSYTGEVTYAYPAIYTVLCQIGIATFPFDDQ-VYVQFASWAYDEDK 217
Query: 406 VPLNATVEPLLTLYNPTAH-PVQVTEFYYSGR 314
+ LNA+ +PLL Y+P +QV+ + GR
Sbjct: 218 ILLNASHKPLLKNYSPNEEWALQVSCYKGFGR 249
>U10081-1|AAA20841.1| 346|Caenorhabditis elegans CEH-22
homeoprotein protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 420 SGHTPHSLATPSADTGYLNTPSXV--CMXRWAEAGPSCRPRYTT 545
S +P+++A SA++GYL TPS + GPS Y T
Sbjct: 296 SSTSPYTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMT 339
>U10080-1|AAA20840.1| 346|Caenorhabditis elegans CEH-22
homeoprotein protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 420 SGHTPHSLATPSADTGYLNTPSXV--CMXRWAEAGPSCRPRYTT 545
S +P+++A SA++GYL TPS + GPS Y T
Sbjct: 296 SSTSPYTVAFGSANSGYLPTPSAYLPATSGYFSNGPSAASSYMT 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,245
Number of Sequences: 27780
Number of extensions: 280768
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -