Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_C15
(806 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 158 7e-40
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 120 2e-28
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 37 0.004
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S... 27 3.1
SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|c... 27 4.1
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 27 4.1
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.5
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 25 9.6
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 9.6
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 9.6
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc... 25 9.6
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 9.6
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 158 bits (384), Expect = 7e-40
Identities = 78/186 (41%), Positives = 115/186 (61%), Gaps = 1/186 (0%)
Frame = -3
Query: 639 QCVKLSKFETEHSXSFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKS 460
QCV+L +FE EH +FIPPDGE ELM YR+ ++I++PFR++P+V ++ + K+ ++ +++
Sbjct: 263 QCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPFRIVPIVEQLSKQKIIYRISIRA 322
Query: 459 NFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAE 280
++ P L + +IP P N +GKA Y+ SEN I WKI R G E AE
Sbjct: 323 DY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSENIINWKIPRFLGETELIFYAE 381
Query: 279 IELLETDTKKKWTRPPISMGFEV-PFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRS 103
+EL T ++ W +PPIS+ F + F SG V+YL+V EP + S + IKWVRY R+
Sbjct: 382 VELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRVSEP--SNSKYKSIKWVRYSTRA 439
Query: 102 GLYETR 85
G E R
Sbjct: 440 GTCEIR 445
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 788 GMPEGKFGINDKFVMXPKXRGNGGISGNT 702
GMPE +FG+NDK K + S N+
Sbjct: 215 GMPECQFGLNDKLDFKLKQSESKSKSNNS 243
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 120 bits (290), Expect = 2e-28
Identities = 65/184 (35%), Positives = 105/184 (57%), Gaps = 4/184 (2%)
Frame = -3
Query: 639 QCVKLSKFETEHSXSFIPPDGEFELMRYRTTKDISLPFRVIPLVREV-GRTKMEVKVVLK 463
QCV+L++FE + + SFIPPDGEF+LM YR + ++ P + V +++E V K
Sbjct: 240 QCVRLARFENDRTISFIPPDGEFDLMSYRMSSNVR-PLIWVECESIVHSGSRIEFMVKAK 298
Query: 462 SNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSA 283
+ FK + +++ IP P + + G +Y + A+VW IK+ AG KE + A
Sbjct: 299 AQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRA 358
Query: 282 EIEL--LETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYI 112
E+ L ++ + + + P+ + F +P F SG +VRYLK+ EPKLNY + WVRY+
Sbjct: 359 EMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY---HAMPWVRYV 415
Query: 111 GRSG 100
++G
Sbjct: 416 TQNG 419
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 36.7 bits (81), Expect = 0.004
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Frame = -3
Query: 639 QCVKLSKFETE-HSXSFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKME--VKVV 469
Q V L +++ FIPPDG+F L ++T D + + +P+V E + K++ +V
Sbjct: 234 QSVNLKRWKQHPDQIEFIPPDGKFTLASFQT--DFATQ-KSLPVVVE-AKNKLDGRFEVR 289
Query: 468 LKSNFKPSLLGQKIEVKIPTPLNTSGV-QLICLKGKAKYKASENAIV-WKIKRMA 310
+++ K S+ KI + IP L + V + + +KY E I+ W +K++A
Sbjct: 290 IRNTGKKSVENLKILITIPQALKSVTVTEGNYIFRASKYTHMEEGILEWSVKKLA 344
>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 321 KRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRY 178
K++ + TQ+ +ELL T T+++W P + + S F+VRY
Sbjct: 229 KKVVPFQSTQMLRIMELLGTPTEERW---PGLKNYPEYYQLSSFEVRY 273
>SPBC106.03 |||DUF1776 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 450 PSLLGQKIEVKIPTPLNTSGVQLICLK 370
PS+L IE + T +G+Q+IC+K
Sbjct: 242 PSILSSSIETFLRTLKRETGLQVICIK 268
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 584 GGMKXMECSV--SNLLSFTHWVEPTVVNDHYWASQSEPDPGPCYP 712
G + +E S+ SN+ T ++ ++ WA+ P P C+P
Sbjct: 57 GNVSKLEASIKGSNVNKSTKFINHCAISHTRWATHGIPSPINCHP 101
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 392 PLVFSGVGIFTSIFCPSREGLKLLF 466
P+V SG G+ ++CP++ G L+F
Sbjct: 162 PVVSSG-GVMADLWCPAQRGTALIF 185
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 213 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 124
VP+ + + YLK+F K N S D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +3
Query: 666 TTGLPKASRILARVTRYASISPXLGXHHEFIIDPKLALWH 785
+T + K RIL RV P H F +P +WH
Sbjct: 70 STRVEKLVRILCRVKEITKTVPPASGRHRF-GNPAFRIWH 108
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 134 SSSGCATSDAPDSTRPGA----ERRGVEWLRESQRVRIFEKYNKK 12
+ GC + + DS+ PG+ + E RE Q+ EKY+ K
Sbjct: 2 ADKGCEAAQSKDSSAPGSGEPRPKTEKELERERQKAAKLEKYHAK 46
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +1
Query: 136 VMVRVIQFRFKHLQIADLESGGCKGNFEP 222
+ R++ R H I +E CK +EP
Sbjct: 53 IFARILDARAGHFSITPIEQTSCKQMYEP 81
>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 414 PTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDT 256
P L+ + VQL+ L + Y ASEN + K +R+A + A+ +L + T
Sbjct: 229 PKKLSANDVQLLVLAIQKFYNASENTPLGK-ERLALLAAFSKGADFDLHKVAT 280
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 9.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 130 DDVMVRVIQFRFKHLQIADLESGGCKGNFEPHGD 231
DD ++ +I+ +F+HL + + GG G+ GD
Sbjct: 149 DDALLLMIEHKFRHLPV--VSDGGPDGSAGDEGD 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,273
Number of Sequences: 5004
Number of extensions: 71989
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -