Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_C14
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.2  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    26   5.5  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   7.3  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   7.3  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 715 PPPPXXEFNPXRRPPXFKXPELXWKQRYQPP 623
           PPPP   F P  +PP    P    K++ + P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 334 ERNNLTWSIMHSLTPNRAAPAPEHDRLR 251
           E +N+ WSI+H +     AP  E   L+
Sbjct: 197 EDSNMAWSIIHKIKTEVVAPISEKKELK 224


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/60 (25%), Positives = 25/60 (41%)
 Frame = -1

Query: 281 CSSAXXXXXXXXXXXTQLLFSSGTSTYASHPSSTYIHTATRFIPRRLLLPTCSSCIFPRL 102
           CS+             +L  +S T+    + SS + HT  R+   + L+  C SC +  L
Sbjct: 123 CSTVLPLEFSVPDVQPRLYTNSSTNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTL 182


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 394 SKLVSRHFEESLRLANQKRGERNNLTWSI 308
           SK+ +   E   RL N+++GE  NLT  I
Sbjct: 158 SKISNSQLEYQQRLINERQGEIENLTQGI 186


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 403  NAASKLVSRHFEES-LRLANQKRGERN 326
            N  SKL  +HFEES  R AN ++  +N
Sbjct: 1986 NVTSKLSQKHFEESHERFANIRQSLKN 2012


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,983
Number of Sequences: 5004
Number of extensions: 44175
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)