Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_C14
(809 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1174 - 26696869-26698191 32 0.47
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 32 0.62
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 29 3.3
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 29 3.3
03_05_0301 + 22928864-22929787 29 4.4
01_05_0513 - 22864657-22867899 29 4.4
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 29 5.8
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.8
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 5.8
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 28 7.6
>12_02_1174 - 26696869-26698191
Length = 440
Score = 32.3 bits (70), Expect = 0.47
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -2
Query: 715 PPPPXXEFNPXRRPPXFKXPELXWKQRYQPPLHPP 611
PPPP P RPP K P + K + P L PP
Sbjct: 154 PPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPP 188
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.9 bits (69), Expect = 0.62
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 718 GPPPPXX-EFNPXRRPPXFKXPELXWKQRYQPPLHPPXH 605
GPPPP +FN PP + P + YQPP PP +
Sbjct: 61 GPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPY 99
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 171 HGHPFHPQETTAPHMLVLYLPKAQDKNSSHPGL 73
H PF PQ PH+ L P AQ ++ HP L
Sbjct: 314 HMVPFQPQNQ--PHLTQLQAPAAQSQSQQHPPL 344
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Frame = -3
Query: 174 PHGHPFHPQETTAPHMLVLYLP-----KAQDKNSSHPGLPKGEPNFAPYNYPPYRAYEK 13
P G P H + + L+LP K+Q NS P LP G P +P+ P + EK
Sbjct: 718 PSGPPPHVSTSFSAASSSLHLPASDTLKSQAPNSLRPPLPPGLPLSSPFVCPTTQTSEK 776
>03_05_0301 + 22928864-22929787
Length = 307
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 177 HPHGHPFHPQETTAPHMLVLYLPKAQD 97
HPH H H Q A HM ++ + + QD
Sbjct: 178 HPHHHHHHQQMVNAQHMALVEVARDQD 204
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -2
Query: 730 GXGXGPPPPXXEFNPXRRPPXFKXPELXWKQRYQPPLHPP 611
G G PPP R P P + QPP+HPP
Sbjct: 175 GGGDNAPPPEVPPEAPRDLPDIPAPTEAAVEVQQPPVHPP 214
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 663 LKXGGRRXGLNSXXGGGGPXP 725
++ G RR G++ GGGGP P
Sbjct: 4 IREGSRRAGVSGGGGGGGPPP 24
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/40 (32%), Positives = 15/40 (37%)
Frame = +3
Query: 687 GLNSXXGGGGPXPXPCXXTSXIPXPPRELXGXA*PGPXPP 806
G + G G P P P + P PP A G PP
Sbjct: 311 GAGAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPP 350
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -2
Query: 730 GXGXGPPPPXXEFN-PXRRPPXFKXPELXWKQRYQPPLHPP 611
G GPPPP ++ P PP + P L + Q H P
Sbjct: 40 GPAAGPPPPSAAYSYPPATPPFHRAPFLHYPQDPMAAPHMP 80
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 730 GXGXGPPPPXXEFNPXRRPPXFKXPE 653
G G PPPP + P + PP +K P+
Sbjct: 217 GSGPSPPPPPYQSPPYKSPP-YKSPQ 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,877,986
Number of Sequences: 37544
Number of extensions: 432228
Number of successful extensions: 1295
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1277
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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