Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_C14
         (809 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    29   5.2  
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    29   5.2  
U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachme...    28   6.9  
U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachme...    28   6.9  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 382 SRHFEESLRLANQKRGERNNLTWSIMHSLTPNRAAPAPEHDRLRVPT 242
           +R   + +++ +     +    W +  S TPN AA  P H  L+ P+
Sbjct: 300 ARGGSDDVKIEDTPSASKRRSRWDLTPSQTPNVAAATPLHSGLQTPS 346


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
           protein T08A11.2 protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 382 SRHFEESLRLANQKRGERNNLTWSIMHSLTPNRAAPAPEHDRLRVPT 242
           +R   + +++ +     +    W +  S TPN AA  P H  L+ P+
Sbjct: 300 ARGGSDDVKIEDTPSASKRRSRWDLTPSQTPNVAAATPLHSGLQTPS 346


>U80952-2|AAB38094.1|  309|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform a protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 162 PFHPQETTAPHMLVLYLPKAQDKNSSHPGLPKGEPNFAPYNYPP-YRAY 19
           P H      P ML+   P  Q   S HP   +  P+++P + PP Y  Y
Sbjct: 53  PIHVPGREPPRMLLPPTPHFQAPFSPHPPPVQQVPSYSPPHAPPSYETY 101


>U80952-1|AAU20846.1|  315|Caenorhabditis elegans Muscle attachment
           abnormal protein1, isoform b protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 162 PFHPQETTAPHMLVLYLPKAQDKNSSHPGLPKGEPNFAPYNYPP-YRAY 19
           P H      P ML+   P  Q   S HP   +  P+++P + PP Y  Y
Sbjct: 59  PIHVPGREPPRMLLPPTPHFQAPFSPHPPPVQQVPSYSPPHAPPSYETY 107


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 715 PPPPXXEFNPXRRPPXFKXPEL 650
           PPPP     P  +PP F  PE+
Sbjct: 125 PPPPSRRHIPEMKPPGFMPPEM 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,430,106
Number of Sequences: 27780
Number of extensions: 301800
Number of successful extensions: 885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)