Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_C11
(835 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 208 7e-55
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 99 4e-22
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 3e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 79 8e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 59 9e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 1e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 53 6e-08
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 4e-05
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 7.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 208 bits (508), Expect = 7e-55
Identities = 95/118 (80%), Positives = 101/118 (85%)
Frame = -2
Query: 702 PRGFFPTXVFGYGSFGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 523
P F G + GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEI 317
Query: 522 TALAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWISKQEYDESGPSIVHRKCF 349
ALAPS+MK+KI+APPERKYSVWIGGSILASL TFQQMWISKQEYDESGP IV+RKCF
Sbjct: 318 QALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
Score = 51.6 bits (118), Expect = 1e-07
Identities = 24/32 (75%), Positives = 25/32 (78%)
Frame = -1
Query: 796 EMAPXASXSSLENSYEFPDGQVITIGNERFRA 701
E+ A SSLE SYE PDGQVITIGNERFRA
Sbjct: 226 ELQTAAQSSSLEKSYELPDGQVITIGNERFRA 257
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 99 bits (238), Expect = 4e-22
Identities = 51/150 (34%), Positives = 86/150 (57%)
Frame = -2
Query: 798 QKWPPXHPXVPXRILTNFPTVRSSLSETKDSVPRGFFPTXVFGYGSFGIHETTYNSIMKC 619
+ W P + L + T+ +L S P F + G + G+H + SI+
Sbjct: 233 ESWTEHKPQIHTYQLPDNQTI--TLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLS 290
Query: 618 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSI 439
D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSI
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSI 350
Query: 438 LASLFTFQQMWISKQEYDESGPSIVHRKCF 349
LASL TF+++ I+ +EY ++ +++ R+ F
Sbjct: 351 LASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 97.5 bits (232), Expect = 2e-21
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Frame = -2
Query: 666 GSFGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIK 490
GS G+HE Y SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + +
Sbjct: 320 GSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVH 379
Query: 489 II-APPERKYSVWIGGSILASLFTFQQMWISKQEYDESG 376
+VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 380 TAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
Score = 29.5 bits (63), Expect = 0.61
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 754 YEFPDGQVITIGNERFRAQRLFSNXRF 674
+EFPDG G ERFR + N F
Sbjct: 281 FEFPDGVTHKFGQERFRISEILFNPSF 307
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 3e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 657 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 478
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 477 P---ERKYSVWIGGSILASLFTFQQMWISKQEYDESGP---SIVHRKC 352
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -1
Query: 787 PXASXSSL-ENSYEFPDGQVITIGNERFR 704
P +S +++ E+ +EFPDG + G ER++
Sbjct: 252 PFSSETTIAESEFEFPDGSRMMFGAERYQ 280
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 79.0 bits (186), Expect = 8e-16
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 12/121 (9%)
Frame = -2
Query: 702 PRGFFPTXVFGYGSFGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 523
P F + G G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI
Sbjct: 258 PECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEI 317
Query: 522 TAL--------APSTM---KIKIIAPPERKYSVWIGGSILASLFT-FQQMWISKQEYDES 379
L P+ + K+KI P R+++V+IGG++LA + MW+SK E++E
Sbjct: 318 KQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEY 377
Query: 378 G 376
G
Sbjct: 378 G 378
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 766 LENSYEFPDGQVITIGNERF 707
L +Y PDG+VI +G+ER+
Sbjct: 236 LMRNYTLPDGRVIKVGSERY 255
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.8 bits (136), Expect = 9e-10
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Frame = -2
Query: 648 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST----------- 502
E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 309 ELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAK 368
Query: 501 ---MKIKIIAPPERKYSVWIGGSILASLFTFQQMWISKQEYDESGPSIVHR 358
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 369 SGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.8 bits (126), Expect = 1e-08
Identities = 27/114 (23%), Positives = 54/114 (47%)
Frame = -2
Query: 705 VPRGFFPTXVFGYGSFGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 526
VP F + G GI E + + + ++ ++ L +N +++GG PG+ R+++E
Sbjct: 598 VPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRE 657
Query: 525 ITALAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWISKQEYDESGPSIV 364
+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 658 LTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.8 bits (121), Expect = 6e-08
Identities = 34/125 (27%), Positives = 55/125 (44%)
Frame = -2
Query: 729 SLSETKDSVPRGFFPTXVFGYGSFGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 550
+LS + +P F GI E S+ +I+ L N V GG +PG
Sbjct: 275 NLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPG 334
Query: 549 IADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLFTFQQMWISKQEYDESGPS 370
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +
Sbjct: 335 FHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGAN 393
Query: 369 IVHRK 355
I+ RK
Sbjct: 394 IMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 603 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 433
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 432 SLFTFQQMWISKQEYDESGPSIVHRK 355
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 464 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 369
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,253
Number of Sequences: 5004
Number of extensions: 59024
Number of successful extensions: 179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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