Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_C08
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    36   0.010
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    32   0.12 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    31   0.21 
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    31   0.28 
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.37 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.9  

>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 474 AHR-GANRSGGAWPGCXXXXXXXXXXXRHKXTHTGEKKXECRVCNRRFMRSDHL 316
           AHR G  R    +P C           RH+ TH   K   C  CNR F RSD L
Sbjct: 18  AHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVL 71


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVCNRRFMRSDHL 316
           H+  HTG K   C  CN+RF R D L
Sbjct: 618 HEQLHTGIKAFACVTCNQRFARMDAL 643



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = -2

Query: 435 GCXXXXXXXXXXXRHKXTHTGEKKXECRVCNRRFMR 328
           GC            H  THT  +  +C +C + F R
Sbjct: 576 GCNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFAR 611


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -2

Query: 438 PGCXXXXXXXXXXXRHKXTHTGEKKXECRV--CNRRFMRSDHL 316
           P C           RH  +HTGEK  EC    C +RF R D L
Sbjct: 7   PFCKRVFHRQEHQVRHIRSHTGEKPFECSYPSCKKRFTRRDEL 49


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRV--CNRRFMRSDHL 316
           H  THTGEK   C    C +RF RSD L
Sbjct: 44  HIRTHTGEKPHVCTFPGCAKRFSRSDEL 71


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRV--CNRRFMRSDHL 316
           H  +HTGEK   C V  C+R F RSD L
Sbjct: 96  HLRSHTGEKPFICSVPECDRSFTRSDAL 123


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -2

Query: 435 GCXXXXXXXXXXXRHKXTHTGEKKXECRVCNRRFMRSDHL 316
           GC           RH  +HT  K   C  C+  F RSD L
Sbjct: 23  GCTKSFTRKEHARRHFRSHTNSKAFICPHCSSSFTRSDVL 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,022
Number of Sequences: 5004
Number of extensions: 22333
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)