Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_C08
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    36   4e-04
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    31   0.010
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    31   0.010

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 36.3 bits (80), Expect = 4e-04
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -2

Query: 384 THTGEKKXECRVCNRRFMRSDHL 316
           THTGEK  EC  C++RF R  HL
Sbjct: 3   THTGEKPFECPECHKRFTRDHHL 25



 Score = 29.9 bits (64), Expect = 0.031
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 438 PGCXXXXXXXXXXXRHKXTHTGEKKXECRVCNRRFMRSDHL 316
           P C            H   HTGEK   C  C+R+F++  +L
Sbjct: 13  PECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANL 53



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVC 346
           H   HTGE+   C +C
Sbjct: 56  HLRVHTGERPYACELC 71


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVCNRRF 334
           H  THTGEK   C+ CNR F
Sbjct: 61  HIRTHTGEKPFSCQHCNRAF 80


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVCNRRFMRSDHL 316
           H   HTGE+  +C VC++ F++S  L
Sbjct: 166 HMRIHTGERPHKCTVCSKTFIQSGQL 191



 Score = 31.1 bits (67), Expect = 0.014
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVCNRRFMRSDHL 316
           H  THTGEK  +C  C++ F   ++L
Sbjct: 110 HYRTHTGEKPYQCEYCSKSFSVKENL 135



 Score = 30.3 bits (65), Expect = 0.024
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVCNRRFMRSDHL 316
           H  THTGEK   C+ C + F  S  L
Sbjct: 194 HMRTHTGEKPYVCKACGKGFTCSKQL 219



 Score = 29.5 bits (63), Expect = 0.041
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVCNRRF 334
           H  THTGEK   C +C + F
Sbjct: 222 HTRTHTGEKPYTCDICGKSF 241



 Score = 27.9 bits (59), Expect = 0.13
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 393 HKXTHTGEKKXECRVCNRRFMRSDHL 316
           H+  HT E+  +C VC R F  S  L
Sbjct: 138 HRRIHTKERPYKCDVCERAFEHSGKL 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,675
Number of Sequences: 438
Number of extensions: 3036
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)