Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_C03
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         29   3.6  
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593...    29   6.3  
11_01_0621 - 4981070-4981136,4982906-4983825                           28   8.3  
08_01_0434 + 3809681-3810016,3810039-3811100                           28   8.3  
03_01_0515 - 3864796-3865425                                           28   8.3  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -1

Query: 631 PXHKKXPXXXXXQKNXXXXXXXPTPPXXPPPXTPXXXPP 515
           P   K P     +         PTP   PPP TP   PP
Sbjct: 65  PKEHKPPAYTPPKPTPTPPTYTPTPKPTPPPYTPKPTPP 103


>03_02_0149 +
           5933134-5933207,5935039-5935267,5935370-5935468,
           5935582-5935616,5935694-5935769,5936552-5936662,
           5937001-5937087,5937302-5937395,5937489-5937606,
           5938047-5938542,5939263-5939298,5940047-5940578,
           5940668-5940792
          Length = 703

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 557 PXXPPPXHTXPPPPXSAP 504
           P  PPP +  PPPP S P
Sbjct: 543 PPPPPPRNMLPPPPKSMP 560


>11_01_0621 - 4981070-4981136,4982906-4983825
          Length = 328

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 548 PPPXHTXPPPPXSAP 504
           PPP H  PPPP + P
Sbjct: 129 PPPPHPLPPPPPTPP 143


>08_01_0434 + 3809681-3810016,3810039-3811100
          Length = 465

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 548 PPPXHTXPPPP 516
           PPP HT PPPP
Sbjct: 6   PPPPHTAPPPP 16


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 557 PXXPPPXHTXPPPPXSAP 504
           P  PPP  + PPPP S P
Sbjct: 90  PPPPPPAASPPPPPPSPP 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,385
Number of Sequences: 37544
Number of extensions: 162506
Number of successful extensions: 3346
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2855
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)