Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_C02
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 62 9e-11
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 61 2e-10
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 30 0.34
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 29 1.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.4
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 26 5.6
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 25 9.7
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 62.1 bits (144), Expect = 9e-11
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = -2
Query: 546 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNN 373
GS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL N
Sbjct: 265 GSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324
Query: 372 KAMLKLNPYAAVLKRKAILELRRRKNLKALAD 277
+ +LNPYA KA ++L K KA +
Sbjct: 325 AVLARLNPYAKAY--KANVKLNTGKTPKAAGE 354
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -1
Query: 607 HLGRFVIWTQSAFGRLDPLFGXMEDTIETKE 515
HLGRFVIWT+SAFG LD +FG + + K+
Sbjct: 245 HLGRFVIWTKSAFGLLDSVFGSTTEAAQLKK 275
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 61.3 bits (142), Expect = 2e-10
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = -2
Query: 546 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNN 373
GS ++ KKN+ LP+ ++N D+TRL+ SDEI+ +++A RV RA +K NPL N
Sbjct: 265 GSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNK 324
Query: 372 KAMLKLNPYAAVLKRKAILELRRRKNLKALAD 277
+ +LNPYA KA +++ K KA +
Sbjct: 325 AVLSRLNPYAKAY--KANVKINSEKTPKAAGE 354
Score = 44.0 bits (99), Expect = 3e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -1
Query: 607 HLGRFVIWTQSAFGRLDPLFGXMEDTIETKE 515
HLGRFVIWT+SAFG LD +FG + + K+
Sbjct: 245 HLGRFVIWTKSAFGLLDSVFGSTTEVAQLKK 275
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 30.3 bits (65), Expect = 0.34
Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Frame = -2
Query: 591 SSGLSPHSAGLTPYSGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRV 412
S G S S + YS S+ + + ++++ + + +S + + +K+
Sbjct: 617 SEGYSSGSETGSTYSSSYSSTYSRGRSYSRSTRSYSKS--RSYSRSRSVTPINNINHKKY 674
Query: 411 IRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA--LADAEKSGLKLSKRNP 238
IR R+L+P ++ + N Y+ + + ++ R R L ++E G + +P
Sbjct: 675 IRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGRLIESEDKGYRSRSSSP 733
Query: 237 AMKAEKLRERRRKN 196
A + + R+R R++
Sbjct: 734 ASRKYRSRQRYRRS 747
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -2
Query: 621 WFREVILDVSSSGLSPHSAGLTPYSGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEI 445
W + + L SS+ ++ + + P + PS+ K ++P PKM +TD L S+ +
Sbjct: 222 WKQSIDL-ASSNDITVIESTIAPQQATTHPPSQPKNAVSVPIPKMDSTDSKGELPSESL 279
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.4
Identities = 27/109 (24%), Positives = 46/109 (42%)
Frame = -2
Query: 525 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 346
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 345 AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 199
+ ++ + + L ++ L+KRN K + RK
Sbjct: 788 PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.4
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 343 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 504
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 621 WFREVILDVSSSGLSPHSAGLTPYSGSWKTPSKQKK 514
WF+ ++++S G + G+ Y+GS + P K++K
Sbjct: 521 WFKGPRINLASEGDNSTLEGVELYTGSEELPQKKEK 556
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 9.7
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = -2
Query: 477 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAILELRRR 301
++T LK DE+RK+ N + L + +++ + L+ + K + +EL
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422
Query: 300 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 202
N LA+ E LKL + + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,612
Number of Sequences: 5004
Number of extensions: 38218
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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