Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_C02
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           84   1e-16
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    80   2e-15
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.5  
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878...    29   3.3  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 43/97 (44%), Positives = 63/97 (64%), Gaps = 1/97 (1%)
 Frame = -2

Query: 546 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA 367
           G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++  NK V R  ++ NPL N  A
Sbjct: 270 GTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAA 329

Query: 366 MLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGL 259
           +LKLNPY    ++ A L E  R K  K   D++++ L
Sbjct: 330 VLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKL 366



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 18/38 (47%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = -1

Query: 607 HLGRFVIWTQSAFGRLDPLFGXME-DTIETKEELQPAP 497
           HLGRFVIWT+SAF +L+ ++G  E  +++ K  + P P
Sbjct: 250 HLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRP 287


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 44/110 (40%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
 Frame = -2

Query: 546 GSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA 367
           G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V     + NPL N  A
Sbjct: 269 GGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAA 328

Query: 366 MLKLNPYAAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 220
           +LKLNPY    ++ A L E  R K      D++++ L   + +    A K
Sbjct: 329 VLKLNPYFGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKAAGK 378



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -1

Query: 607 HLGRFVIWTQSAFGRLDPLFGXME-DTIETKEELQPAP 497
           HLGRFVIWT+ AF +LD ++G  +   ++ K  + P P
Sbjct: 249 HLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRP 286


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 352 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 441
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>09_02_0570 +
           10786779-10787144,10787353-10787547,10787647-10787826,
           10787925-10788119,10789629-10789727,10789822-10790328,
           10790438-10790779
          Length = 627

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = -2

Query: 537 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 370
           K P+KQ K    PQ +++  D +R   + K  + +  L A +     + + K  P   + 
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468

Query: 369 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 202
           A LK       +++   L L R+K L     A+ +     +    +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,062
Number of Sequences: 37544
Number of extensions: 295219
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)