Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_C02
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 66 4e-11
Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical pr... 30 1.7
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 30 1.7
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 29 4.0
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 28 7.0
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 28 7.0
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 28 7.0
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 28 9.2
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/85 (34%), Positives = 52/85 (61%)
Frame = -2
Query: 558 TPYSGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 379
T Y + S+ KK +++P P MAN+D +R+++S+E+ K +RAP K + NPL
Sbjct: 261 TIYGTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLK 320
Query: 378 NNKAMLKLNPYAAVLKRKAILELRR 304
+ KLNPYA++L++ + +++
Sbjct: 321 KRTLLYKLNPYASILRKASKANVKK 345
Score = 37.1 bits (82), Expect = 0.015
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = -1
Query: 607 HLGRFVIWTQSAFGRLDPLFG 545
HLGR +IWT+SAF +LD ++G
Sbjct: 244 HLGRLIIWTESAFKKLDTIYG 264
>Z70287-8|CAA94301.2| 1717|Caenorhabditis elegans Hypothetical protein
R09E10.7 protein.
Length = 1717
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -2
Query: 600 DVSSSGLSPHSAGLTPYSGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN 421
D SS S +S SGS + S + + + P P M+ TD + KS+ I +R P
Sbjct: 1090 DARSSSSSDNSGYTNRNSGSTHSHSTESIDDSQPGPSMSTTDSSATKKSNSI---VRKPR 1146
Query: 420 KRVIRA 403
+R R+
Sbjct: 1147 RRTNRS 1152
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 381 TNNKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 202
T++ + K+N +K LE+R + + + D E SG +LS P A L++RRR
Sbjct: 353 TSSASPQKMNHEQQRYSQKRHLEMRTGRTTRDMRDYESSGRQLSP-TPTTTAGLLKKRRR 411
Query: 201 K 199
+
Sbjct: 412 E 412
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 29.1 bits (62), Expect = 4.0
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = -2
Query: 525 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 346
K+ +NFN+ Q D+TR +K K +R + I R P T N+ L+ +
Sbjct: 138 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 345 AAVLKRKAILELR------RRKNLKALADAEKSGLK 256
+A K + + R ++ L+A A+A +G K
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRLRARAEARAAGKK 230
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 480 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 325
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 480 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 325
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 480 TDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRK 325
T++ LLK DEIR++ N R I+ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 27.9 bits (59), Expect = 9.2
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Frame = -2
Query: 525 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 346
K+ +NFN+ Q D+TR +K K +R + I R P T N+ L+
Sbjct: 35 KRARNFNIGQDIQPKKDVTRFVKWP---KYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 345 AAVLKRKAILELR------RRKNLKALADAEKSGLK 256
+A K + + R ++ L+A A+A +G K
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKK 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,611,360
Number of Sequences: 27780
Number of extensions: 226542
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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