Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_B21
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 30 2.4
10_01_0270 - 2876907-2877547,2877838-2878012 29 3.1
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.1
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 29 4.1
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.5
05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724 29 5.5
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.5
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.6
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -2
Query: 670 PDSIHQPPPDLTSISINPLTPY*KEFAPGLKPPXSSEAPSAYLTPSSLGMXKGVSPPYF 494
P + PPP SIS P P AP P + + PS+ PS + P+F
Sbjct: 93 PPLLPTPPPPPASISPTPAPPLPPPPAPAPPPTPTPKFPSSSANPSPPDAYPFTNYPFF 151
>10_01_0270 - 2876907-2877547,2877838-2878012
Length = 271
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -2
Query: 700 FGYINPDHQIPDSIHQPPPDLTSIS---INPLTPY*KEFAPGLKPPXSSEAPSAYLTPS 533
F Y NP P + H+PPP T + + TP P K P + +P Y P+
Sbjct: 168 FHYKNPSPPAPAAYHKPPPSYTHPAPPVYSYPTPAYSHPTPVYKQPLPTPSPPIYHPPA 226
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 90 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 191
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -1
Query: 662 HTPTTPRLNIHFHQSPDAVLEGVRAGVKASVVIRGSISVSHPLVTGHG 519
H+PT RL++ F PD L A KA + +VS P G G
Sbjct: 25 HSPTRRRLSLVFSGPPDGALSVAAAEEKADAGEEAAAAVSAPRGGGGG 72
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 82 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 228
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>05_01_0492 - 4102379-4103494,4104105-4104383,4105395-4105724
Length = 574
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = -2
Query: 688 NPDHQIPDSIHQPPPDLTSISINPLTPY*KEFAPGLKPPXSSEAPSAYLTPSSLGMXKGV 509
NP +P S+HQ P ++ + P P + + P ++ PS Y+ P S G
Sbjct: 372 NPSTAVPPSVHQQPEEVAA----PYGPPPQSYPPNVR------LPSPYVPPPS-----GP 416
Query: 508 SPPYFQVN 485
+PP++ N
Sbjct: 417 APPFYGPN 424
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 249 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 70
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 69 ILHSF 55
+LHSF
Sbjct: 1408 LLHSF 1412
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 450 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 361
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,166,210
Number of Sequences: 37544
Number of extensions: 431691
Number of successful extensions: 1220
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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