Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_B18
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.003
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   4.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.1 bits (67), Expect(2) = 0.003
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 516 PPPPPPXGXXKKKKKK 563
           PPPPPP G  KK+K K
Sbjct: 24  PPPPPPPGYVKKRKNK 39



 Score = 24.6 bits (51), Expect(2) = 0.003
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 498 PPXXVXPPPPPP 533
           PP    PPPPPP
Sbjct: 5   PPGNPPPPPPPP 16


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 501  PXXVXPPPPPPXGXXKKK 554
            P  V PPPPPP    +KK
Sbjct: 1091 PSAVPPPPPPPPAEVEKK 1108


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 4.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 516 PPPPPPXG 539
           PPPPPP G
Sbjct: 762 PPPPPPPG 769



 Score = 21.4 bits (43), Expect(2) = 4.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 501 PXXVXPPPPPP 533
           P    PPPPPP
Sbjct: 756 PIMGGPPPPPP 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,395,529
Number of Sequences: 5004
Number of extensions: 14986
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)