Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_B15
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    31   0.18 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.56 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.9  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   3.9  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   3.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.2  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   9.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.1  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   9.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.1  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 510 NLHPPAEPEHRRIARHERTGRLILQVTTNSDV 605
           NL  PAE +HRR+ R +R G L   +  NS +
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPLDKDLKPNSKI 266


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 388  PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 564
            P T+ T +   PP+          P  ++    TST  T  T +    P T+++  +T+ 
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702

Query: 565  P 567
            P
Sbjct: 1703 P 1703



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
 Frame = +1

Query: 373 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 525
           P   L  ++ TTI     P  + +     KPT        ANT    TST  T  T +  
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380

Query: 526 RNPNTAAS 549
             P T++S
Sbjct: 381 STPITSSS 388


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
 Frame = +3

Query: 177 SAGAPISAVRAGGVISSFGGPVGRPPLQSRRSARFSRTGWAATAEVSPPATCADSQDILP 356
           S+ + IS+  +    SSF          S+ S+ FS T  ++++  S   T + S    P
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTS----SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393

Query: 357 PCKLLTATNLTSHHANYNFTGSTS-LTRCYSHTEEANREHLSSTHKHALHRKNLHP 521
                 +++L+SH ++ +   S++ ++  + H   ++R   S +  H+L   +  P
Sbjct: 394 ASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSS-SHSSSHSLSSLSSKP 448


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 655 KQANKKASKFPWGRKIDTSEFVVTCKIRRPVRS 557
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 372 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 551
           T T   S    ++ + S S +    H  +  +E   S H+H  HR++     EP    ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163

Query: 552 RHER 563
           RH R
Sbjct: 164 RHHR 167


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 236 TRRPASVTVEAICPVLADWVGRDRGSLTSGYLCR 337
           TR+ + + ++A+CPVL + VG     LT   L R
Sbjct: 362 TRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 356  TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 499
            TM  + ++K     RKL+    HL +  L+ H   QP    +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 343 KTFYHHANFLPQQIL 387
           +TF HHAN  P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 445 PTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNA 564
           P L +PT+   Q R      GK  +   NP +  SP + A
Sbjct: 219 PLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMA 258


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +3

Query: 237 PVGRPPLQSRRSARFSRTGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHH-ANYNF 413
           P G  PL+        R+G+AA A++ P        D     ++L +T   S    N  F
Sbjct: 323 PNGLQPLRQTFEEFVKRSGFAAVAKIVPQVGGEADVDPKEYMEMLLSTYKASKELVNTAF 382

Query: 414 TGSTSLTR 437
            G T  T+
Sbjct: 383 HGDTDFTK 390


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +1

Query: 358 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 474
           H N     + P T   T   VPP  H  T T+  PT  ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,215
Number of Sequences: 5004
Number of extensions: 65059
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)