Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_B12
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0865 - 25516072-25517007                                         29   4.6  
01_06_0581 - 30386018-30386440                                         29   4.6  
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23...    28   8.1  

>06_03_0865 - 25516072-25517007
          Length = 311

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 497 VHLYIMKVGCRAGLGEAGSA 438
           VH Y+  VG RAG G+AG A
Sbjct: 269 VHKYMASVGVRAGCGDAGGA 288


>01_06_0581 - 30386018-30386440
          Length = 140

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 276 SGVRSQVLERLEMRLRSGGGGARRQ 350
           SG+  +V +R+E   R GGGG RR+
Sbjct: 31  SGIEVKVRKRVEKEARMGGGGRRRR 55


>09_01_0008 -
           233137-233279,233712-233827,235376-235720,236218-236292,
           236508-236636,237516-237589,237836-237968,239366-239584,
           239671-239756,239843-241107,241304-241640,242548-242862,
           243614-243697,243776-243883,243981-244079
          Length = 1175

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 518 TXSCGXSVHLYIMKVGCRAGLGEAGSA 438
           T   G ++H+++M  G R G+G+ G+A
Sbjct: 821 TVEDGRNLHIWMMAAGWREGIGQGGAA 847


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,092
Number of Sequences: 37544
Number of extensions: 222848
Number of successful extensions: 906
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)