Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_B09
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.034
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 540 PPPPFFGXXXKNPPPPXXGGXXFXPPPP 457
           PP P  G     PPPP   G    PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = -1

Query: 536 PPPFLGXXXKTXPPPXXGXXFXPPPPPKXXXXXXPPXXXGGGXK 405
           P P +G      PPP       PPPPP       PP    GG +
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPP------PPPAVSAGGSR 791



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
 Frame = -3

Query: 561 GGXXXKXPPPPFFGXXXKNPPPP----XXGGXXFXPPPPK 454
           GG     PPP   G     PPPP      GG  +  P P+
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798



 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = -2

Query: 505 PXPPXXGGXXFXPPPPQKXXXXPPXP 428
           P  P  GG    PPPP      PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 558 GXXXKXPPPPFFGXXXKNPPPPXXG 484
           G     PPPP F    + PPPP  G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 470 PPPPPKXXXXXXPPXXXGGGXKKKKK 393
           PPPPP       PP     G  KK+K
Sbjct: 12  PPPPPGFEPPSQPPPPPPPGYVKKRK 37


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 540  PPPPFFGXXXKNPPPPXXGGXXFXPPPP 457
            PPPP          PP   G    PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 536 PPPFLGXXXKTXPPPXXGXXFXPPPPPK 453
           PPP       + P P  G    PPPPP+
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,414
Number of Sequences: 5004
Number of extensions: 21842
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)