Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_B04
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    31   0.74 
AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    30   1.7  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -3

Query: 676 SKLSLRNK---VTXYKTCIRPVMTYASVVFXHAARTHLKSLQVIQSRFCR 536
           +K S  NK   +  YKT IRP + Y +VV     ++  K+++ +Q+ F R
Sbjct: 210 NKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AL137227-6|CAB70236.2|  159|Caenorhabditis elegans Hypothetical
           protein F58D5.5 protein.
          Length = 159

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/59 (35%), Positives = 26/59 (44%)
 Frame = -2

Query: 680 SKQTVPPQ*GNXLQNLHTPRHDVRKRSVRSRSPHPLEIPSGYSITILQDSRRSALVP*E 504
           S QT P   GN  Q    PRH  R+R  +S SP  L   +  S+     +R   L P E
Sbjct: 26  SHQTTPKSSGNPRQQQAQPRH--RQRKAQSSSPASLAAFASSSVCSSPSARNVPLPPVE 82


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 652 VTXYKTCIRPVMTYASVVFXHAARTHLKSLQVIQSRFCR 536
           +  YKT IRP + Y +VV     ++  K+++ +Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,254,092
Number of Sequences: 27780
Number of extensions: 307416
Number of successful extensions: 784
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)