Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_B02
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0513 - 22864657-22867899 30 2.0
03_01_0607 + 4464669-4465367,4466212-4467369,4468005-4469114,446... 30 2.7
02_05_0686 - 30900748-30902167,30903442-30904742 24 4.0
01_05_0490 + 22672241-22674679 24 4.0
07_03_1382 - 26170563-26170631,26171151-26171843 24 4.4
03_01_0515 - 3864796-3865425 24 4.5
05_01_0131 + 888247-888771,889092-889154 24 4.5
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 25 4.9
09_04_0080 + 14393797-14393894,14395100-14395202,14395307-143954... 28 8.1
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 8.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 28 8.1
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 30.3 bits (65), Expect = 2.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P GGGG PP
Sbjct: 164 PPPPEDRPPEGGGGDNAPP 182
>03_01_0607 +
4464669-4465367,4466212-4467369,4468005-4469114,
4469273-4469314,4469496-4469572,4469671-4469755,
4469818-4469901,4469988-4470089,4470181-4470279,
4470794-4470919
Length = 1193
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPP 548
PPPP P GGGGG P
Sbjct: 51 PPPPHHLAPRGGGGGGGP 68
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 786 PPPPPPP 806
PPPPPPP
Sbjct: 313 PPPPPPP 319
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 789 PPPPPPP 809
PPPPPPP
Sbjct: 326 PPPPPPP 332
>01_05_0490 + 22672241-22674679
Length = 812
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 786 PPPPPPP 806
PPPPPPP
Sbjct: 641 PPPPPPP 647
Score = 23.8 bits (49), Expect(2) = 4.0
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 789 PPPPPPP 809
PPPPPPP
Sbjct: 664 PPPPPPP 670
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 787 PPPPPPP 807
PPPPPPP
Sbjct: 184 PPPPPPP 190
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 790 PPPPPPP 810
PPPPPPP
Sbjct: 200 PPPPPPP 206
>03_01_0515 - 3864796-3865425
Length = 209
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 786 PPPPPPP 806
PPPPPPP
Sbjct: 71 PPPPPPP 77
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3
Query: 789 PPPPPPP 809
PPPPPPP
Sbjct: 89 PPPPPPP 95
>05_01_0131 + 888247-888771,889092-889154
Length = 195
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 787 PPPPPPP 807
PPPPPPP
Sbjct: 133 PPPPPPP 139
Score = 23.8 bits (49), Expect(2) = 4.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 790 PPPPPPP 810
PPPPPPP
Sbjct: 160 PPPPPPP 166
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 24.6 bits (51), Expect(2) = 4.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 549 GGXPPPPPXG 578
GG PPPPP G
Sbjct: 1146 GGVPPPPPVG 1155
Score = 22.6 bits (46), Expect(2) = 4.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 546 GGGXPPPPP 572
G G PPPPP
Sbjct: 1105 GAGAPPPPP 1113
>09_04_0080 +
14393797-14393894,14395100-14395202,14395307-14395427,
14396208-14396287,14396702-14396878,14396992-14397215,
14397881-14397887,14398807-14398888,14399188-14399384
Length = 362
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 558 PPPPPXGXXXXGGGG 602
PPPPP G GGGG
Sbjct: 344 PPPPPAGDEGGGGGG 358
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 546 GGGXPPPPPXGXXXXGGGG 602
GGG PPPP GGGG
Sbjct: 18 GGGGPPPPRRRLRSSGGGG 36
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 546 GGGXPPPPPXGXXXXGGGG 602
G G PPPP G GGGG
Sbjct: 365 GPGPGPPPPPGAAGRGGGG 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,461,282
Number of Sequences: 37544
Number of extensions: 497531
Number of successful extensions: 33544
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11838
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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