Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_T7_B02
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical ... 30 2.4
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.1
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 29 3.1
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 24 3.5
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 7.2
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 28 7.2
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 28 7.2
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 28 9.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 28 9.5
U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical pr... 28 9.5
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 25 9.6
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 25 9.6
>AF067219-3|AAC17027.1| 74|Caenorhabditis elegans Hypothetical
protein R12E2.6 protein.
Length = 74
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 598 PPPXXXXPXGGGGGXPPP 545
PPP P GGG G PPP
Sbjct: 35 PPPACGNPCGGGFGPPPP 52
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G GG PPP
Sbjct: 769 PPPPPPPPPGGFKGGPPPP 787
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G GG PPP
Sbjct: 769 PPPPPPPPPGGFKGGPPPP 787
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G GG PPP
Sbjct: 352 PPPPPPPPPGGFKGGPPPP 370
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP GG GG PPP
Sbjct: 782 PPPPSFRGGRGGHGGPPPP 800
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 23.8 bits (49), Expect(2) = 3.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 787 PPPPPPP 807
PPPPPPP
Sbjct: 122 PPPPPPP 128
Score = 23.8 bits (49), Expect(2) = 3.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 790 PPPPPPP 810
PPPPPPP
Sbjct: 138 PPPPPPP 144
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G GG PPP
Sbjct: 319 PPPPSRFGPPGMGGMPPPP 337
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 549 GGXPPPPPXGXXXXGG 596
GG PPPPP G GG
Sbjct: 331 GGMPPPPPPGMRYPGG 346
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G GG PPP
Sbjct: 329 PPPPSRFGPPGMGGMPPPP 347
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +3
Query: 549 GGXPPPPPXGXXXXGG 596
GG PPPPP G GG
Sbjct: 341 GGMPPPPPPGMRYPGG 356
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G G PPP
Sbjct: 240 PPPPKGSPPLAGSGSPPPP 258
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G G PPP
Sbjct: 261 PPPPKGSPPLAGSGSPPPP 279
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G G PPP
Sbjct: 246 PPPPKGSPPLAGSGSPPPP 264
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 546 GGGXPPPPPXGXXXXGGGG 602
GG PPP P G GGGG
Sbjct: 46 GGCAPPPAPCGGGCGGGGG 64
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 546 GGGXPPPPPXGXXXXGGGG 602
GG PPP P G GGGG
Sbjct: 70 GGCAPPPAPCGGGCGGGGG 88
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 546 GGGXPPPPPXGXXXXGGGG 602
GG PPP P G GGGG
Sbjct: 46 GGCAPPPAPCGGGCGGGGG 64
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 546 GGGXPPPPPXGXXXXGGGG 602
GG PPP P G GGGG
Sbjct: 70 GGCAPPPAPCGGGCGGGGG 88
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 549 GGXPPPPPXGXXXXGGGGXXXXFFF 623
GG PPPP GGGG +F
Sbjct: 278 GGAPPPPSGSAMGGGGGGGATSAYF 302
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 549 GGXPPPPPXGXXXXGGGGXXXXFFF 623
GG PPPP GGGG +F
Sbjct: 172 GGAPPPPSGSAMGGGGGGGATSAYF 196
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G G PPP
Sbjct: 634 PPPPPMGLPAVGAGAPPPP 652
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 601 PPPPXXXXPXGGGGGXPPP 545
PPPP P G G PPP
Sbjct: 460 PPPPPMGLPAVGAGAPPPP 478
>U41991-7|AAA83347.1| 255|Caenorhabditis elegans Hypothetical
protein C42D4.3 protein.
Length = 255
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 546 GGGXPPPPPXGXXXXGGGG 602
GGG PPPPP GGG
Sbjct: 32 GGGCPPPPPPMCSGGCGGG 50
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 24.6 bits (51), Expect(2) = 9.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 549 GGXPPPPPXG 578
GG PPPPP G
Sbjct: 787 GGIPPPPPLG 796
Score = 21.4 bits (43), Expect(2) = 9.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 546 GGGXPPPPP 572
G G PPPPP
Sbjct: 766 GVGVPPPPP 774
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 24.6 bits (51), Expect(2) = 9.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 549 GGXPPPPPXG 578
GG PPPPP G
Sbjct: 787 GGIPPPPPLG 796
Score = 21.4 bits (43), Expect(2) = 9.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 546 GGGXPPPPP 572
G G PPPPP
Sbjct: 766 GVGVPPPPP 774
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,357,799
Number of Sequences: 27780
Number of extensions: 225859
Number of successful extensions: 7219
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2903
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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