Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_A19
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    30   0.42 
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.2  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   6.9  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   9.1  

>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -1

Query: 235 SDVDTTDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSS-KEGSPSKEASTEDSPXXX 59
           S  D +   +++ A V  T      + ++      T  HS+ KE  P+ E + E      
Sbjct: 125 STEDASKPTSSDTASVKETENSDPKSAENEVLEGETTQHSNNKEAHPNTEENKEQEDNEE 184

Query: 58  XXXXKGLRTPSFLKKKK 8
                G  TPS ++KKK
Sbjct: 185 DDEDDGWITPSNIRKKK 201


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -1

Query: 241 VLSDVDTTDFLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEGSPS 95
           VL+D+D  D    + +H+     ++  N D  + + S     SK   PS
Sbjct: 114 VLNDIDIYDIETKQWSHIPGMITENQTNDDAKEVNGSDVDEKSKHLYPS 162


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 214 FLNAERAHVDSTRGDHTVNGDHSDAHQSTFSHSSKEGSPSKEASTEDSP 68
           F +  R H      +HT +   S  H  + S SS   S S   S+E +P
Sbjct: 65  FRSLRRGHTSGHASEHTSSSRSS--HDESDSMSSSSESDSDSVSSESNP 111


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 521 RLPAQRGRVQRALRPEP 471
           R+  + GRVQ+ALRP P
Sbjct: 157 RMRRREGRVQKALRPTP 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,890
Number of Sequences: 5004
Number of extensions: 37283
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)