Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_T7_A02
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    29   3.0  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    29   3.0  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    29   5.2  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 28/116 (24%), Positives = 43/116 (37%)
 Frame = +3

Query: 141 TELYPDLRSHDARVKKKTDSIDLRDPNGLRRRVSRFECENATSKVTLFRASRLSGLHSEH 320
           TEL+ D+     RV     S  +R   GL     R   +NA   +        +G   EH
Sbjct: 465 TELF-DIAPQKTRVSVVQYSDQIRHEFGLDNYSDRKSLQNAIRNIEYLTGLTRTGAAIEH 523

Query: 321 IXXXXXXXXXXXRGVQA*SRGW*LRTTGRSAECMNQMSETAVPLVLSSITIATTSH 488
           +           R V   SR   + T GRS + + + S+ A    +    +  T+H
Sbjct: 524 VANEAFSERRGARPVGQVSRVAIVITDGRSQDNVTRPSDNARRQDIQLFAVGVTNH 579


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 28/116 (24%), Positives = 43/116 (37%)
 Frame = +3

Query: 141 TELYPDLRSHDARVKKKTDSIDLRDPNGLRRRVSRFECENATSKVTLFRASRLSGLHSEH 320
           TEL+ D+     RV     S  +R   GL     R   +NA   +        +G   EH
Sbjct: 465 TELF-DIAPQKTRVSVVQYSDQIRHEFGLDNYSDRKSLQNAIRNIEYLTGLTRTGAAIEH 523

Query: 321 IXXXXXXXXXXXRGVQA*SRGW*LRTTGRSAECMNQMSETAVPLVLSSITIATTSH 488
           +           R V   SR   + T GRS + + + S+ A    +    +  T+H
Sbjct: 524 VANEAFSERRGARPVGQVSRVAIVITDGRSQDNVTRPSDNARRQDIQLFAVGVTNH 579


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 148 YIRTFGAMMHVLRKKPIASISAIQMGFDVASRVLNAKTRLV 270
           YIRT     +VLRKKP  S+       D   +++NA   LV
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNALQGLV 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,601,616
Number of Sequences: 27780
Number of extensions: 394276
Number of successful extensions: 1152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)