Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P24
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -2

Query: 924 LXPGPAXAPXRAGXKAPAXGNAXXXTPPPPPGNXAXXP 811
           + P PA AP      AP  G      PPPPPG     P
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGG--PPPPPPPPGVAGAGP 775


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 210 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 112
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/70 (24%), Positives = 19/70 (27%)
 Frame = -2

Query: 927 SLXPGPAXAPXRAGXKAPAXGNAXXXTPPPPPGNXAXXPQXTXRQGGGGXXGXXXXPPPA 748
           SL P P      A    P         PPPPP +     +                PPPA
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394

Query: 747 XEXRXXGVXP 718
              R     P
Sbjct: 395 IPGRSAPALP 404


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = -2

Query: 927 SLXPG-PAXAPXRAGXKAPAXGNAXXXTPPPPPGNXAXXPQXTXRQGG 787
           SL PG P   P   G + P+        PPPPPG        T  Q G
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQ-----PPPPPPPGYVKKRKNKTPAQSG 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,039
Number of Sequences: 5004
Number of extensions: 38255
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)