Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_P24
(928 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 37 3e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 32 0.008
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.020
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.020
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.026
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.026
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.026
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.026
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.026
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.026
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 27 0.32
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 6.9
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 22 9.1
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 36.7 bits (81), Expect = 3e-04
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +2
Query: 158 CENATSLSLMIDS---LLATYDRESPPDSKIV--VNLTLHLRHANIRESDSTVXILAXPP 322
C++ TS S + L YDR+ P+ K ++ L ++H N+ E TV
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 323 MNWIDXLLIWNAGEW-GCSTWLVSSXRXWXPXVV 421
+ W L W + E+ ++ V S W P +V
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIV 121
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.9 bits (69), Expect = 0.008
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Frame = +2
Query: 164 NATSLSLMIDSLLATYDRESPPD---SKIVVNLTLHLRHAN-IRESDSTVXILAXPPMNW 331
N +++S ++D+LL YD PD V + + +R I E D T + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 332 IDXLLIWNAGEWGCSTWLVSSXRXWXPXVVXLN 430
+D L + G+ + + R W P N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.020
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +2
Query: 185 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESDSTVXILAXPPMNWIDXLLI 349
+++ LL++Y+ P + V + L+ ++ E + + A + W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 350 WNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
WN E+ G ++ + W P ++ N+A
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 30.7 bits (66), Expect = 0.020
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +2
Query: 185 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESDSTVXILAXPPMNWIDXLLI 349
+++ LL++Y+ P + V + L+ ++ E + + A + W+D L
Sbjct: 58 LLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLKLEWVDYNLQ 117
Query: 350 WNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
WN E+ G ++ + W P ++ N+A
Sbjct: 118 WNESEYGGVKDLRITPNKLWKPDILMYNSA 147
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.026
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 NIRESDSTVXILAXPPMNWIDXLLIWNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
++ E + + A + W+D L WN E+ G ++ + W P ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.026
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 NIRESDSTVXILAXPPMNWIDXLLIWNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
++ E + + A + W+D L WN E+ G ++ + W P ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.026
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 NIRESDSTVXILAXPPMNWIDXLLIWNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
++ E + + A + W+D L WN E+ G ++ + W P ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.026
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 NIRESDSTVXILAXPPMNWIDXLLIWNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
++ E + + A + W+D L WN E+ G ++ + W P ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.026
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 NIRESDSTVXILAXPPMNWIDXLLIWNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
++ E + + A + W+D L WN E+ G ++ + W P ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.026
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 275 NIRESDSTVXILAXPPMNWIDXLLIWNAGEW-GCSTWLVSSXRXWXPXVVXLNAA 436
++ E + + A + W+D L WN E+ G ++ + W P ++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSA 79
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 26.6 bits (56), Expect = 0.32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -2
Query: 918 PGPAXAPXRAGXKAPAXGNAXXXTPPPPPGNXAXXP 811
PGP +P ++ +AP G+ + PPPG P
Sbjct: 21 PGPQPSPHQS-PQAPQRGSPPNPSQGPPPGGPPGAP 55
Score = 22.6 bits (46), Expect = 5.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -1
Query: 382 PSAAAPFPCVPN 347
PSA AP P +PN
Sbjct: 411 PSAGAPMPPIPN 422
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 22.2 bits (45), Expect = 6.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 919 TRPRXXAXSXRXEGPRXGKR 860
T P S EGPR GKR
Sbjct: 197 TEPSSSTKSYVLEGPRNGKR 216
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.8 bits (44), Expect = 9.1
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Frame = +2
Query: 287 SDSTVXILAXPPMNWIDXLLIWNAGEWGCSTWLVSSXRXWXPXVVXLNAAAPTGGDYXLR 466
+D V + P + +W G+ CS WL + W LN A + Y
Sbjct: 110 ADLMVGLAVLPFSATWEVFKVWIFGDLWCSIWL--AVDVWMCTASILNLCAISLDRYLAV 167
Query: 467 XR-------VSPPGPRLLXTRXWTXXXPLSXP 541
R +SP RLL W + P
Sbjct: 168 TRPVSYPQIMSPRRARLLVATVWILSFVICFP 199
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,541
Number of Sequences: 438
Number of extensions: 4175
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -