Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P21
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1107 - 24024387-24024497,24025799-24026410                       29   4.7  
11_01_0411 - 3114959-3115000,3115504-3116703                           28   8.2  
05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332     28   8.2  

>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
 Frame = +3

Query: 144 TTLPRCSPLKTPPVKCGVRAAGPAVGQHAVPPAWS*XTRWRTAACCPAM*MPSLAPVTXA 323
           T  P  +P  TPP       A  A      PPA S  T    A   PA   P+ AP T A
Sbjct: 25  TPTPAAAPATTPPASSKKTPAPAAAPTTTTPPAAS--TPPAAAPTTPATPAPAEAPTTPA 82

Query: 324 -IRSTDTSGTEWRGELRAVVXPPQAXRDNRXPATDTRRHYPQA 449
             ++  T  T      +A    P+A +    PA+      P A
Sbjct: 83  PTKAPPTKST------KAPAPAPKAAKATPPPASSPPVEAPVA 119


>11_01_0411 - 3114959-3115000,3115504-3116703
          Length = 413

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = +3

Query: 150 LPRCSPLKTPPVKCGVRAAGPAVGQHAVPPAW 245
           LPR SP   PPV    R A PAV     PP W
Sbjct: 256 LPRASP--PPPVLYLPRQAAPAVPCPPAPPLW 285


>05_04_0391 - 20862788-20862935,20863704-20863822,20864922-20865332
          Length = 225

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = +1

Query: 187 SVECGRRG-RRWDSMR---YHRHGAXTRGG 264
           + ECGRRG RRW   +   +HR G    GG
Sbjct: 33  AAECGRRGSRRWSRKKARGHHRRGGGGGGG 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,510,943
Number of Sequences: 37544
Number of extensions: 356286
Number of successful extensions: 884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)