Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P16
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    37   0.005
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    27   3.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   8.5  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +2

Query: 536 AELKYLRCITNAIMPYLLKNDDIQNSVFRVLVREIFAGWVLLSLTDVLADPYILNTLIIL 715
           A+ +YLR  T  ++  +L N    + +   LV E+     LL L   ++DP   N LII 
Sbjct: 210 AQKRYLRNWTTQVLSIILPNYYETSPLVLSLVTEVIINTTLLPLVSYISDPDFFNYLIIQ 269

Query: 716 ATGN 727
           A+G+
Sbjct: 270 ASGS 273


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 716 ATGNERMAQLPASPNYKVEFLETFVXQTESLYAQRCKLL 832
           A GN+ + + P  P YK E   +F+      Y  RC  L
Sbjct: 350 AHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCFL 388


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 573 IAFVMHLRYLSSAFLFA 523
           I FV+H R L++AFLFA
Sbjct: 633 IRFVIHYRSLATAFLFA 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,384,351
Number of Sequences: 5004
Number of extensions: 68174
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)