Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_P16
(909 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 31 1.7
11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793 30 2.9
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517... 30 2.9
09_04_0185 - 15396119-15396317,15396781-15396821,15396932-153970... 30 2.9
11_01_0031 + 248264-248513,248519-249007,249178-249445,249631-24... 29 3.9
04_03_0210 + 12691551-12692099 29 3.9
09_01_0131 - 1966406-1966425,1967469-1967901 29 5.1
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 29 5.1
09_02_0068 - 3832858-3833228,3835773-3836223 29 6.7
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729 28 8.9
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 533 NAELKYLRCITNAIMPYLLKNDDIQNSVFRVLVREIFAGWVLLSLTDVLADPYILNTLI- 709
+AE K L+ + + ++ K D+Q FR RE+ A V+ + + LA+P +N I
Sbjct: 230 SAEHKILQSLADGLISVTAKPQDLQCYFFRCTARELLACAVMRPVVN-LANPRFINERIE 288
Query: 710 ILATGNERMAQ 742
+LA + A+
Sbjct: 289 LLALSHANKAE 299
>11_01_0647 - 5247217-5247467,5247593-5247842,5247943-5249793
Length = 783
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = -1
Query: 759 LGEAGNCAILSLPVANII--KVFSIYGSASTSVNDNNTQPANISLTSTRNTEFC-ISSFL 589
LGE G+C L+ PV+NII + + GS + D + P T +E+ S
Sbjct: 91 LGEVGHCFGLADPVSNIILNAIAHLSGSPPLQLQD-HPPPLPRKRTRRSYSEWWGFISST 149
Query: 588 SRYGMIAFV-MHLRYLS 541
S G+IAF+ ++ RYL+
Sbjct: 150 SLNGLIAFMKVYFRYLT 166
>11_01_0643 -
5174154-5174254,5174296-5174346,5174611-5174739,
5174869-5175118,5175220-5177157
Length = 822
Score = 29.9 bits (64), Expect = 2.9
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = -1
Query: 759 LGEAGNCAILSLPVANII--KVFSIYGSASTSVNDNNTQPANISLTSTRNTEFC-ISSFL 589
LGE G+C L+ PV+NII + + GS + D + P T +E+ S
Sbjct: 94 LGEVGHCFGLADPVSNIILNAIAHLSGSPPLQLQD-HPPPLPRKRTRRSYSEWWGFISST 152
Query: 588 SRYGMIAFV-MHLRYLS 541
S G+IAF+ ++ RYL+
Sbjct: 153 SLNGLIAFMKVYFRYLT 169
>09_04_0185 -
15396119-15396317,15396781-15396821,15396932-15397090,
15397320-15397517
Length = 198
Score = 29.9 bits (64), Expect = 2.9
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 518 RGGGPASRATAPRPAGPSTACNDATRTAGDAPL 420
RG PA+ A A +P S C D RTA + PL
Sbjct: 157 RGSEPATAAAAAKPCTDS--CRDVERTAAEEPL 187
>11_01_0031 +
248264-248513,248519-249007,249178-249445,249631-249718
Length = 364
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = -2
Query: 557 TSDT*APRFCSQPRGGGPASRATAP----RPAGPSTACNDATRTAGDA 426
T+ + AP CS P GP+ + P RP S A N+AT G A
Sbjct: 181 TTSSNAPTTCSPPMTSGPSRIYSTPANGRRPTPTSCAANNATCIGGGA 228
>04_03_0210 + 12691551-12692099
Length = 182
Score = 29.5 bits (63), Expect = 3.9
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -2
Query: 539 PRFCSQPRGGGPASRATAPRPAGPSTACNDATRTAGDAPL 420
P S PRG GP S A A + +A NDA R AG P+
Sbjct: 21 PDAASAPRGIGPLSPAAAAKLV---SAVNDARRQAGAPPV 57
>09_01_0131 - 1966406-1966425,1967469-1967901
Length = 150
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 400 GKLFSVYNGASPAVRVASLHAVLGPAGRGAVAL 498
GK ++ NG S + R + A++GP+G G L
Sbjct: 107 GKAATILNGVSGSARPGEVLAIMGPSGCGKTTL 139
>06_03_1283 -
28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 395 CHDRANKSSSCSHLRSPIIADISALNDI*HDNCISTL*TNNTHRH 261
CHD ++ S+C + +I + A +D H++C T ++T +H
Sbjct: 783 CHDHSHGHSNCKEPSNQLITNKHACHD-GHNHCADTSNLHDTKKH 826
>09_02_0068 - 3832858-3833228,3835773-3836223
Length = 273
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 400 GKLFSVYNGASPAVRVASLHAVLGPAGRGAVAL 498
GK ++ NG S R + A++GP+G G L
Sbjct: 113 GKAATILNGVSGCARPGEVLAIMGPSGCGKTTL 145
>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
Length = 559
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 301 LSC*MSFNADMSAIIGDLR--WLHDEDLFALSWQNGKLFSVYNGASPAVRVAS 453
L+C ++ D+ + D R W+ DL L Q +LF + G+ P VRV S
Sbjct: 285 LACSLNEGPDVDQGLPDERSWWVRPGDLQGLKGQLLRLFELSGGSVPLVRVPS 337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,980,826
Number of Sequences: 37544
Number of extensions: 453953
Number of successful extensions: 1472
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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