Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P16
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   5.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   8.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 258 LGSHHFTAL*KHATSHHGSLLTKIH*KRFVF 166
           L +HH      HA   H   L + H KR+ F
Sbjct: 276 LDNHHVHHANHHAILGHSGFLCERHQKRYFF 306


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 577 HDRVRDAPQILELRVSVR 524
           HD  RD PQIL  + S R
Sbjct: 308 HDTQRDNPQILTYKYSKR 325


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 271 VLFVYSVLMQLSC*MSFNADMSAIIGDLRWLHDEDL 378
           +  VYS+L  +   +++  D+  +IG   W+ D D+
Sbjct: 94  ITMVYSLLGII---IAYTGDVHGVIGAGHWIGDHDV 126


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 508 PPPRGCEQKRGAQ 546
           P P GC ++RG Q
Sbjct: 1   PGPNGCPRRRGRQ 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,004
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)