Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P15
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.5  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.6  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 43  DFT*REAVNRARLLELF*EQVTRLIKNTK 129
           D T  E   R R  +L  EQV RL+ N K
Sbjct: 76  DTTFNEEKFRERTTKLDSEQVNRLVNNCK 104


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 588 QRQATKDAGTISGLNVLRIINEPTAAAIAYG 680
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 879 GPFXIPLNSGQXXHQGDCQSPH 814
           GP   PL   Q  HQ   Q PH
Sbjct: 157 GPDSPPLVESQMHHQMHTQHPH 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,525
Number of Sequences: 438
Number of extensions: 5373
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)