Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P13
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.020
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.062
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 14/27 (51%), Positives = 14/27 (51%)
 Frame = -1

Query: 413 PPPPPPGGGXXXXXXGXPPPPPXGXKK 333
           PPPPPP  G        PPPPP   KK
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +3

Query: 165 PXXNPPPXXXKGGFPPXPXXXLPPPP 242
           P  NPPP     GF P      PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 162 PPXXNPPPXXXKGGFPPXPXXXLPPPPXLK 251
           PP   PPP    G  PP      PPP  +K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 24.6 bits (51), Expect(2) = 2.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 414 PXPPPPXGGGXXXXXXXAXPPPPRXKK 334
           P PPPP  G          PPP   KK
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 20.6 bits (41), Expect(2) = 2.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 525 GGPPPPP 505
           G PPPPP
Sbjct: 7   GNPPPPP 13


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -1

Query: 425 IXXXPPPPPPGGGXXXXXXGXPPPPP 348
           I   PPPPPP  G        PPPPP
Sbjct: 757 IMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 32.3 bits (70), Expect = 0.083
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 567 GGXAPPXXPXXGXGGGPPPPP 505
           GG  PP  P    G GPPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 413 PPPPPPGGGXXXXXXGXPPPPP 348
           PPPPPP G         PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 515 GGPPPXPXXGXXGGAXPPXXPXXXP 589
           GGPPP P      GA PP  P   P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +3

Query: 159 GPPXXNPPPXXXKGGFPPXPXXXLPPPP 242
           GPP   PPP     G PP P    PPPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPP----PPPP 783



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 512 GGGPPPXPXXGXXGGAXPPXXP 577
           GG PPP P  G  G   PP  P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +3

Query: 489 PXXXXXGGGGXPXPXPAXGXXGXPXPPXXP 578
           P     GG   P P P     G P PP  P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -3

Query: 414 PXPPPPXGGGXXXXXXXAXPPPPRXKKXG 328
           P PPPP  G          PPPP     G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 161 APXXXPPPXKXXGGFPPXP 217
           AP   PPP    GG PP P
Sbjct: 747 APIPVPPPAPIMGGPPPPP 765


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 506 GGGGGPPPXPXXGXXGG 556
           GG GGPPP P  G  GG
Sbjct: 195 GGSGGPPPGP--GGFGG 209


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = +3

Query: 162  PPXXNPPPXXXKGGFPPXPXXXLPPPP 242
            PP   PP      G PP P      PP
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAPP 1238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,572
Number of Sequences: 5004
Number of extensions: 31973
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)