Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_P10
(913 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c... 29 0.69
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 0.69
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 29 1.2
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 2.8
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 2.8
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 27 3.7
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 8.5
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 8.5
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 8.5
>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.69
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Frame = +3
Query: 249 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 401
Y VG+ N + ++++ WGHS+ +V E+L +QD E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 29.5 bits (63), Expect = 0.69
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 692 HHPPNQERAVNLSILPVSGPGEIPRVESN*AAGSTPGGALPSIPLS 555
HHPP + +S PV P +P+V S+ S P LP P+S
Sbjct: 137 HHPP-LHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPIS 181
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = -3
Query: 677 QERAVNLSILPVSGPGEIPRVESN*AAGSTPGGALPSIPLSFSFATILPPESKIFGFPEA 498
+ V L LP+ G E P S T ALP PLSFS P ++ PE+
Sbjct: 398 ENELVKLFFLPLDGDVESPHPTS------TMPEALPREPLSFSLPEKAPEKATNISIPES 451
Query: 497 A 495
A
Sbjct: 452 A 452
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = -1
Query: 673 KELLICQSFRCPGLVRFPVLSQIKPQAPXXXXXXXXXXXVSALQPYSPRSPKSLVSRKLP 494
+EL F PG +F + +I +AP LQPY R K V + LP
Sbjct: 545 RELAALVDFLMPG--KFEIREEINLEAPDEEQEAYIRSLQEHLQPYILRRLKKDVEKSLP 602
Query: 493 AE 488
++
Sbjct: 603 SK 604
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 478 TTMARRAASGKPKILDS-GGSMVAKLKLKGIDGRAPPGVEPAA*FDSTRGISPGPDTG 648
TT A+ K K L+S ++AK+ G PG P A + G +PG D G
Sbjct: 583 TTAAKDEFEAKQKELESVANPIMAKIYQAGGAPGGMPGAAPGAAPGAAPGAAPGGDNG 640
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 728 DXSLHQXRTAMHHHPPNQERAVNLSILPV 642
D +LH + +H + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Frame = +2
Query: 368 FAKGVFINQERKLEVRRRLDTA----LVLTVNMSSSDPPTLLQWLGGQLPGNQRFWTPGG 535
F G+F+ + K +R + A L NM G P WT G
Sbjct: 258 FNAGLFVFKPLKAHYKRLMALARFPKLYDNANMMEQSLLNFAYNSAGAFPWESLDWTFNG 317
Query: 536 VWLQS*NLKELTEEHHQEW 592
+W + +L L H + W
Sbjct: 318 LWARKNDLPYLKAVHGKHW 336
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 294 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 401
NW + ++G I SSQ E +L KV SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 694 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 599
T R+ K + RCP ++R+P L IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,465,217
Number of Sequences: 5004
Number of extensions: 69491
Number of successful extensions: 179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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