Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P04
         (930 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    32   0.57 
12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613     31   0.99 
07_01_0284 - 2082249-2082256,2082496-2083009                           31   1.7  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    30   2.3  
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   4.0  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           29   7.0  
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75...    29   7.0  
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    28   9.2  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   9.2  
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677...    28   9.2  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -3

Query: 343 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
           H P AAA  P VP++    P  L +     GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>12_02_1041 + 25626210-25626595,25628607-25630542,25630572-25630613
          Length = 787

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 780 RGEQKQEH-HGEHGAGRQXVCPGRVSGKTSG 691
           RG  ++EH  GEHGAGR+ +C  R+    +G
Sbjct: 753 RGGGRREHLEGEHGAGREVLCETRLGVACAG 783


>07_01_0284 - 2082249-2082256,2082496-2083009
          Length = 173

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = +3

Query: 393 QPPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARFKFGSRMHNSDEMD 572
           +PPP  + +AP+  I AP     AW   LQF  +  I P + RL  F FG     + E+D
Sbjct: 73  EPPPPPSTTAPI--IAAP-----AWAPLLQFAATQQIIPISARL--FVFGVSKKRTTELD 123


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 241 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 357
           V+ H  +  R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 256 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 167
           +GG  L    ++Q  G   Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -1

Query: 759 HHGEHGAGRQXVCPGRVSGKTSGTXPRELPPRHGPGSAPHWTDPS 625
           HHG H      + PG  +G  +G  P   PP H    AP    PS
Sbjct: 297 HHGHHPPPPHPLPPGAGAGAGTGAPPP--PPAHPAAPAPPPPAPS 339


>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
            752025-753905,754093-754296,754807-754899,755036-755122,
            755241-755328,755533-755645,755943-757259,757398-758672,
            759166-759273
          Length = 2233

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
 Frame = -1

Query: 795  GRQGSRGEQKQEHHGEHGAGRQXVCP-GRVSGKTSGTXPRELPPRH-GPGSAPHWTDPS- 625
            G++      + E HG   +      P G VSG+   T   E   RH GPGS   +TD + 
Sbjct: 2063 GQKRRSSTSEAEQHGSSTSRHNQHAPVGEVSGRAH-TSKSEKDSRHSGPGSREQFTDSAG 2121

Query: 624  ---HPT 616
               HPT
Sbjct: 2122 LFRHPT 2127


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 128 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 283
           +L   +D L+  YD+  PPDS+ V        HA      + +R+L  + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


>01_07_0188 -
           41866689-41866763,41866889-41867155,41867277-41867722,
           41867945-41868033,41868279-41868368,41868661-41868739,
           41868979-41869042,41869597-41869684,41869776-41869836,
           41869906-41869969,41870134-41870188,41870275-41870346,
           41870469-41870551,41870629-41870724,41871279-41871383,
           41872159-41872227,41872470-41872561,41872667-41872886
          Length = 704

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 370 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 203
           ++PP     H   + AP P +P+ S   P++  +   PH        S +QM  Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,825,080
Number of Sequences: 37544
Number of extensions: 549916
Number of successful extensions: 1816
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1815
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)