Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_P03
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.89
01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296 30 2.1
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 30 2.7
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 29 3.6
08_02_0875 + 22103903-22106293 29 3.6
02_04_0452 + 23044190-23045227 29 3.6
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.6
12_02_1128 - 26341118-26341204,26341302-26341441,26341567-263416... 29 4.8
06_03_1310 + 29238644-29240260 29 4.8
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 29 4.8
04_01_0041 - 464695-464850,467485-469029 29 6.3
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 29 6.3
01_05_0227 - 19512866-19514983 29 6.3
01_01_0046 - 331758-332627 29 6.3
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.3
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 28 8.3
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.89
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 546 AISATSTRSSNPRFHTPTTP 605
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>01_01_0725 - 5668288-5669094,5669724-5669909,5670039-5670296
Length = 416
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 591 TPTTPDLTSISINPLNAVLXGIRAGGKSLRLSSEAPSAYLTPSSLGMA 734
+P++P + +S NP + I G S R+ + S +P+ GMA
Sbjct: 308 SPSSPTFSLVSSNPFSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMA 355
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 528 IKPPSPAISATSTR-SSNPR--FHTPTTPDLTSISINP 632
I PPSPA + S+R S +PR F TP T T+ S +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSP 62
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 582 RFHTPTTPDLTSISINPLNAVLXGIRAGGKSLRLSSEAPSAYLTPSSLGMAKGVSPPYFQ 761
R+ T P + N + + I + + R + SA PSSLGM + +SPP
Sbjct: 286 RYDRKTNPHNRGLVQNFIEILCSRIPSSRNNFRAKVKEDSATF-PSSLGMGRALSPPKMS 344
Query: 762 VNDESQASR 788
V+ E R
Sbjct: 345 VDLEMGMKR 353
>08_02_0875 + 22103903-22106293
Length = 796
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 537 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGIRAGG 668
P+P ++A S R NP+ PDL + +N L A G+ G
Sbjct: 506 PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAWPSGVGPAG 549
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 481 HPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPP 603
H +L H+ +A SH SR H P + P S PP
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 284 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 457
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 458 VEGVNVLATPSSSRITIGGLALMHQ 532
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>12_02_1128 -
26341118-26341204,26341302-26341441,26341567-26341663,
26341755-26341830,26341919-26342118,26342199-26342297,
26342395-26342479,26342786-26343024,26343233-26343403,
26343605-26343848,26343980-26344253,26344755-26344934,
26345342-26345423,26346209-26346278,26346802-26346901,
26347003-26347097,26347181-26347317,26347342-26347420,
26347591-26347651,26348580-26349009
Length = 981
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 609 LTSISINPLNAVLXGIRAGGKSLRLSSEAPSAYLTPSSLGMAKGVSP 749
+T+ S + +A G GG SS +PSA TP+++G G +P
Sbjct: 7 MTTESDSDSDAAAQGGGGGGFGSETSSASPSAPGTPTAMGAGGGAAP 53
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +1
Query: 475 AGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKE 654
A HPF S ++ P + P R+ L H+ P H PP+ P P P +P
Sbjct: 351 AAHPFDCSKAQCQATPPTTRRPGGRTPL--APHRSPLPHHMPPRRTPPTPPPPSSPTPSH 408
Query: 655 FAP 663
P
Sbjct: 409 LPP 411
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 730 MPSDEGVRYADGASDDNRRLLPPARIPXSTA--FRGLME 620
+ S EG+R+A SD R L PA IP TA FR L++
Sbjct: 11 LASSEGIRFA--RSDSRFRSLSPAPIPIPTAPSFRSLVD 47
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 245 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 421
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 422 TVD 430
+D
Sbjct: 100 PLD 102
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 697 GASDDNRRLLPPARIPXSTAFRGLMEMDVKSGVVGVWNRGFDDRVDVAEIAGEG 536
G+S RRL PPA S R L +D + G + R DD ++ EIA G
Sbjct: 1685 GSSSGGRRLPPPAPSSSSKKLRSLSALDSRPGALS--KRTADD-LEEGEIALSG 1735
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 462 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 370
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>01_01_0046 - 331758-332627
Length = 289
Score = 28.7 bits (61), Expect = 6.3
Identities = 22/71 (30%), Positives = 28/71 (39%)
Frame = +1
Query: 505 YWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGVKASGC 684
YW PY +S PP P PP + HP P+IP P
Sbjct: 13 YWF--PYWTSPPPPPPPPPPPPSSSRYRPPSPPSSRHPHPTIPAARAAPPLGP------T 64
Query: 685 HQRLHQRISPP 717
++RLHQ+ PP
Sbjct: 65 NRRLHQQPPPP 75
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +2
Query: 236 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 416 PVTVDLCWTTADVTVEGVNVLATPSS 493
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +1
Query: 517 RPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGVKASGCHQRL 696
+P A PP + Q + Q+P QP Q HP P + P + H +
Sbjct: 388 QPNAQQFPPPPVQPQQSNTQLPPQAMQPQQ--HP-------PVQNQMRPQTPPNYPHYQP 438
Query: 697 HQRISPP 717
HQ ++PP
Sbjct: 439 HQSLNPP 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,052,906
Number of Sequences: 37544
Number of extensions: 507713
Number of successful extensions: 1557
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -