Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_P01
         (964 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   5.2  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    27   5.2  

>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
 Frame = +2

Query: 173 DLRQKLYALEDELWRNVSDPMWRQSDLGGDVELTKAFVALDELXQAVPRSRRPPLNSW-I 349
           DL++ L  L DE W N+ +P              + F A  +   A  R+    ++++ +
Sbjct: 132 DLKRGLSTLTDEDWNNIPEPGDLTRKKRTKQPRRERFYATSDFVLASARNENQAISNFAV 191

Query: 350 WTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMDLTEAVLMDPKSSVT--NSM 520
            T A  +   ++G    F E    + +   +    +   +LT    +DPK  +T  NSM
Sbjct: 192 DTQAGTETPDMNGTKTNFVEIGAARDKVLGIKL-AQASSNLTSPSTIDPKGYLTSLNSM 249


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 398 YFAEFARTQSRPGAVPAPVREWMDLTE 478
           YF +  R QS P  +P PV   + LT+
Sbjct: 291 YFPQHRRFQSAPAPIPRPVSTLIPLTQ 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,790
Number of Sequences: 5004
Number of extensions: 53541
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)