Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_P01
(964 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0240 + 8196140-8198248,8198381-8198650 30 2.4
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 30 3.2
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 29 4.2
09_01_0083 + 1187861-1188340 29 4.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.5
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 29 5.5
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522... 28 9.6
08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860 28 9.6
07_03_1160 - 24430240-24431268 28 9.6
04_04_0044 - 22333376-22333898,22335509-22336227 28 9.6
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 28 9.6
02_05_0924 - 32749682-32750200,32750756-32750959,32751062-327511... 28 9.6
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.6
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 30.3 bits (65), Expect = 2.4
Identities = 25/102 (24%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Frame = +1
Query: 655 QPPLPXARDKGXPPXMXXXWXPASXXSGXRKXPPXAPSX-EXXXRSXPQRHPGXPTXXPX 831
+PP+P R P + P S P P + P HP P P
Sbjct: 545 RPPMPLLRP---PQPLPLVNVPRFQPSAMPYPPHQQPHLMQGVPHMMPTMHPPPPPPIPG 601
Query: 832 XPXXXXPXGXXGPI---CPXXXPGRXXXEPXXPXXXEXPSXP 948
P G GP+ P PG+ P P P P
Sbjct: 602 QPQVIRMPGSMGPMPTNIPPPPPGQNPYMPGPPRPYSMPPPP 643
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.9 bits (64), Expect = 3.2
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 233 MWRQSDLGGDVELTKAFVALDELXQAVPRSRRPPLNSW 346
M++ LGGD EL + +LD + V S RPP SW
Sbjct: 1183 MYQMITLGGDAEL-ELVDSLDPFSEGVVFSVRPPKKSW 1219
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 29.5 bits (63), Expect = 4.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -1
Query: 505 RRLGVHQHRFGEVHPFPNWRRNSAGP 428
R+L H HR V P WRR P
Sbjct: 122 RQLSAHDHRLSTVAPVSRWRRKVGSP 147
>09_01_0083 + 1187861-1188340
Length = 159
Score = 29.5 bits (63), Expect = 4.2
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 253 RGRRRANKGFRGAGRVXSGRTEESTAPAQLLDLDERYRENANHRRTLQILCRVREDAVTA 432
R RRR +G GAGR+ + ++ ++ER + RT + C +R V A
Sbjct: 89 RWRRRLRRGRGGAGRISC--QDAGRRRSERGGVEERRLRGSGWMRT-EERC-LRRIGVQA 144
Query: 433 RRCSGAS-SGMDGP 471
+ C G S + MDGP
Sbjct: 145 KSCGGISCAWMDGP 158
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 5.5
Identities = 28/117 (23%), Positives = 31/117 (26%), Gaps = 2/117 (1%)
Frame = +1
Query: 610 VXQCPPHPXEXTXILQPPLPXARDK--GXPPXMXXXWXPASXXSGXRKXPPXAPSXEXXX 783
V PP P PPLP + G P P + PP P+
Sbjct: 272 VPAAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPA----- 326
Query: 784 RSXPQRHPGXPTXXPXXPXXXXPXGXXGPICPXXXPGRXXXEPXXPXXXEXPSXPXG 954
HP P P P GP P P P P P P G
Sbjct: 327 ------HPAAPAPPPPAPSPSAAGAGSGP--PPPPPPAAPAAPRPPGPGPGPPPPPG 375
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 29.1 bits (62), Expect = 5.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 412 REDAVTARRCSGASSGMDGPHR 477
RE+A AR CSG G G HR
Sbjct: 700 REEAAAARACSGCRRGRRGEHR 721
>12_02_1096 +
26050224-26051058,26051599-26051831,26051940-26052230,
26052860-26052988,26053082-26053255,26053334-26053547,
26053881-26053968,26054195-26054239,26056969-26057015,
26057441-26057727,26057812-26058051,26058141-26058257
Length = 899
Score = 28.3 bits (60), Expect = 9.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 310 RTEESTAPAQLLDLDERYRENANHRRTLQILCRVREDAVTARRCSGASSGMD 465
R E P ++L L+ R R + +HR L++ R A RC G S D
Sbjct: 225 RAVEGEEPPRILHLNPRLRGDWSHRPVLEMNTCFRMQWGKAHRCDGNPSKDD 276
>08_02_1360 + 26391141-26391287,26392256-26392627,26393372-26393860
Length = 335
Score = 28.3 bits (60), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 387 DITNTLPSSRGRSHGPALFRRQFGNGWTSPKRC 485
D+ L R + P RR+ G GWT+P +C
Sbjct: 301 DLAAVLRDWRNYTAAPPAARRRGGFGWTTPGKC 333
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.3 bits (60), Expect = 9.6
Identities = 24/112 (21%), Positives = 31/112 (27%)
Frame = +1
Query: 625 PHPXEXTXILQPPLPXARDKGXPPXMXXXWXPASXXSGXRKXPPXAPSXEXXXRSXPQRH 804
P+P + P +P + PP P G PP P + + P
Sbjct: 59 PNPNQPPLQPTPGVPPLPNPDVPPMNKPDVPPMPKPDGP-PIPPVQPCPDQPPQPKPD-- 115
Query: 805 PGXPTXXPXXPXXXXPXGXXGPICPXXXPGRXXXEPXXPXXXEXPSXPXGRG 960
G P P P P G P P P + P P G
Sbjct: 116 -GPPLPNPNQPPQPNPNGPPKPDMPPMPKPDGLPNTYEPSRPDQPPQPISDG 166
>04_04_0044 - 22333376-22333898,22335509-22336227
Length = 413
Score = 28.3 bits (60), Expect = 9.6
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 217 ERVGSDVETIRFRGRRRANKGFRGAGRVXSGRTEESTAPAQLLDLD-ERYRENANHRRTL 393
E V ++ + RGR A++ RGA RV E + AP D+D E + N
Sbjct: 147 EAVSPEILALILRGRVDADEVARGAARVCRAWREAAAAPDVWGDVDIEAWCRRVN----- 201
Query: 394 QILCRVREDAVTAR 435
CR R DA R
Sbjct: 202 ---CRPRADAAVRR 212
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 28.3 bits (60), Expect = 9.6
Identities = 16/66 (24%), Positives = 20/66 (30%)
Frame = +1
Query: 655 QPPLPXARDKGXPPXMXXXWXPASXXSGXRKXPPXAPSXEXXXRSXPQRHPGXPTXXPXX 834
Q P+P + PP P G PP P + P P P+ P
Sbjct: 40 QMPMPGPPSQPPPPQAMYQAHPQYPMPGSLPPPPPRPPSFAPENALPPSSPPPPSPPPPP 99
Query: 835 PXXXXP 852
P P
Sbjct: 100 PSSPPP 105
>02_05_0924 - 32749682-32750200,32750756-32750959,32751062-32751109,
32751769-32751819,32751907-32752032,32752117-32752257,
32752750-32752971,32753160-32753312,32753536-32753718,
32753964-32754110,32754212-32754319,32754426-32754530,
32754824-32754928,32755243-32755310,32755498-32755576,
32755876-32755935,32756023-32756076,32756168-32756233,
32756701-32756753,32757042-32757096,32757645-32757787,
32758236-32758333,32758436-32758716
Length = 1022
Score = 28.3 bits (60), Expect = 9.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 217 ERVGSDVETIRFRGRRRANKGFRGAGRVXSGRTEESTAPAQLLDLDERY-RENA 375
E++ S++ ++R RRAN G RG R R E PA D + Y RE A
Sbjct: 911 EKLASELASVRSPTPRRANSGLRGTRRDSISRRHE---PAPRRDNNAGYEREKA 961
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.6
Identities = 17/54 (31%), Positives = 20/54 (37%)
Frame = +1
Query: 658 PPLPXARDKGXPPXMXXXWXPASXXSGXRKXPPXAPSXEXXXRSXPQRHPGXPT 819
PP P A+ PP P G +K P P + S P PG PT
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPK-GGASRPPAAPGVPT 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,038,971
Number of Sequences: 37544
Number of extensions: 502960
Number of successful extensions: 1441
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1422
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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