Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP13_FL5_O16
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    29   0.69 
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    29   0.69 
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.7  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   6.4  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   8.5  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   8.5  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   8.5  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   8.5  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -2

Query: 403 VSPVRPCLQHRHQCLERALTSGRSSA-ELLQQALSPFGIRQTTRSTPPSIDNRRAGCPFP 227
           +S ++P LQ    C  R L   + +   LL+Q  S  G + + +       N   G P P
Sbjct: 265 ISSMQPMLQFCKVCKNRILVEHQDTEFHLLKQRQSSMGGKVSAKKKQKQNLNITKGLPLP 324

Query: 226 SRGLC 212
           + G C
Sbjct: 325 NNGAC 329


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 153 PDPYRGTSRPKSWPRHTDGEHSPRLGNGHPARRLSIDGGVLRVVW 287
           P P   TSRP ++  + D   +         RRL   GGVLRV W
Sbjct: 39  PIPRTRTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEW 83


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 382 LQHRHQCLERALTSGRSSAELLQQA 308
           LQH+ QCLE AL    S   L QQA
Sbjct: 876 LQHKRQCLELALQKINSLVILEQQA 900


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 114 GTVPSLRMWPVPSPDPYRGTSR 179
           GT+ SL +WP+ SPD +    R
Sbjct: 59  GTILSLYIWPILSPDLFFANQR 80


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 497 PDVAPFRRLSTDTSRS 450
           P V P RR STDTSRS
Sbjct: 879 PKVGPPRRQSTDTSRS 894


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 199 IPTENTVLDSGTDTRPV--GC 255
           IP ENT++  G +TRP   GC
Sbjct: 492 IPDENTIISLGLNTRPTFFGC 512


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 227 ESRTVFSVGMSRPRFRPRGPSVRIRRGHR 141
           E   +FS   S+P F+PR P+  I R  R
Sbjct: 427 ECAFLFSPNASQPHFQPRAPTFGIPRNVR 455


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +1

Query: 199 IPTENTVLDSGTDTRPV--GC 255
           IP ENT++  G +TRP   GC
Sbjct: 492 IPDENTIISLGLNTRPTFFGC 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,703,129
Number of Sequences: 5004
Number of extensions: 81965
Number of successful extensions: 256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)