Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP13_FL5_O09
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 2.1
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 30 2.7
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 30 2.7
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.6
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 29 4.7
04_01_0041 - 464695-464850,467485-469029 29 6.3
01_05_0227 - 19512866-19514983 29 6.3
04_04_1682 + 35332907-35333720,35334583-35335202 28 8.3
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595... 28 8.3
02_05_0158 - 26362259-26362695,26363732-26363903 28 8.3
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 28 8.3
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 496 SHYYWRSRPYASSHPPLRSRATSTRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGL 669
S+ Y + P S P S + + S ++PT+P TS + +P +P +PG
Sbjct: 1735 SYNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGY 1794
Query: 670 KPPLSSXAPSA-YLTPSSL 723
P S +PS+ PSS+
Sbjct: 1795 SPTSPSYSPSSPSYNPSSV 1813
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 514 SRPYASSHPPLRSRATSTRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSS 687
S Y+ + P + S ++P + +PT+P TS S +P +P +P P +
Sbjct: 1694 SPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAK 1752
Query: 688 XAPSAYLTPSS 720
+PS +PSS
Sbjct: 1753 YSPSHAYSPSS 1763
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +1
Query: 526 ASSHPPLRSRATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSXAPS 699
A+ PPL AT+T + TP TP+ P P P + PP+ S APS
Sbjct: 22 AAGTPPLAVPATNTPPNPATTPTPLTPNPNPSPTLPPPP--MSTPPVVAPPMHSFAPS 77
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 538 PPLRSRATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPP 678
PP RSR T R+ TP T +TS S P+ P P PP
Sbjct: 311 PPARSRRTPPRTRFSTGSTPDTKQVTSPSPRPVQPSNAPPPPPPPPP 357
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.6
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +2
Query: 284 TETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSL--KIPVTVDLCWTTADVT 457
TE +N V V L SS GY D + ++ V + K+ V +D TAD++
Sbjct: 167 TEAGANRVLVCDLH--SSQAMGYFDIPVDHVYGQVMNLIGDVRGKVAVMMDDMIDTADIS 224
Query: 458 VEGVNVLATPSSSRITIGGLALMHQ 532
+ +N+L P G L+HQ
Sbjct: 225 LPNINILMKPIKLGTIAKGAELLHQ 249
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 544 LRSRATSTRSSNPRFHTPTTP 606
+ + +T+TR S PR H PTTP
Sbjct: 1 MAASSTATRLSPPRLHAPTTP 21
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 245 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 421
+I R + D++ T +SN + V +LP VSS + Y D ++ + P P ++ V
Sbjct: 40 LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99
Query: 422 TVD 430
+D
Sbjct: 100 PLD 102
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 462 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 370
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>04_04_1682 + 35332907-35333720,35334583-35335202
Length = 477
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 497 RITIGGLALM--HQATLPCDLGLHQPDH 574
R T G L+ H ATL CDLGLH H
Sbjct: 337 RCTADGNELLRFHCATLSCDLGLHGATH 364
>02_05_0788 +
31758119-31758384,31758482-31758634,31759385-31759509,
31759650-31759678,31760943-31761008,31761059-31761125,
31761226-31761370,31761404-31761451,31762014-31762182,
31762645-31762779,31762858-31763064,31763608-31763735,
31763815-31763866,31764046-31764060,31764502-31764609
Length = 570
Score = 28.3 bits (60), Expect = 8.3
Identities = 21/86 (24%), Positives = 36/86 (41%)
Frame = +2
Query: 236 QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 415
Q I + ++ L N TV + N + GY+ +N+ + PSLK
Sbjct: 198 QVFCIVLEMFFYQLLQLLKVPNEKTVNVIENAIQTLPGYQPPKHINIGEYISSHVPSLK- 256
Query: 416 PVTVDLCWTTADVTVEGVNVLATPSS 493
D C T ++ +EG++ L S+
Sbjct: 257 ----DFCEPTVEM-LEGMSALKALST 277
>02_05_0158 - 26362259-26362695,26363732-26363903
Length = 202
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 520 PYASSHPPLRSRAT-STRSSNPRFHTP-TTPDLTS 618
P ASS PP S AT +T SS+P TP +TPD T+
Sbjct: 132 PTASSSPP--STATPATPSSDPGMDTPSSTPDATT 164
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 821 RRGXDYAWMTTYKAQAVIHHSLEIRGRTPLAMPSDEGVRYADGASD 684
R G +Y + V HHSL + G TP+ ++Y D A +
Sbjct: 469 RLGMEYGLLQIPSMPEVKHHSLSLEGFTPVKDVDVTKIKYKDKARE 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,569,568
Number of Sequences: 37544
Number of extensions: 515428
Number of successful extensions: 1548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1545
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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